paramix

0.0.2

Aggregate and Disaggregate Continuous Parameters for Compartmental Models

0packages depend

6.3Kdownloads / year

43.9%test coverage

12/13checks pass

Overview

About

Maintained by Carl PearsonFirst published 2024-12-092 releasesCRAN page ↗

A convenient framework for aggregating and disaggregating continuously varying parameters (for example, case fatality ratio, with age) for proper parametrization of lower-resolution compartmental models (for example, with broad age categories) and subsequent upscaling of model outputs to high resolution (for example, as needed when calculating age-sensitive measures like years-life-lost).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("paramix", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-paramix

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-paramix

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-paramix

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.4 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.22

43.9%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-08
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 89%
Return-value docs: 100%
References docs: 0%

Downloads

6.3K

CRAN downloads in the past year

Rank #8,345 · ~17/day · ~527/mo

Releases R versions

Daily download trend is not available in this view yet.

20730 days

1.2K90 days

6.3K1 year

Compare downloads with other packages →

Also on100 r2u3 autocran

Repository

GitHub ↗ cmmid/paramix

2Stars

0Forks

0Open issues

0Open PRs

0Releases

129Commits

2Contributors

129 commits · Last activity 2025-08-21

Stars over time

2024-07-18 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/cmmid/paramix on 2026-07-31.

Continuous integration (1)

GitHub Actions

Lint, format, editor (2)

lintrRStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (1)

data.table

LinkingTo (0)

none

Suggests (8)

lintr knitr rmarkdown ggplot2 roxygen2 wpp2019 testthat patchwork

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Carl Pearson

Author, Maintainer

Authors (3)

Carl Pearson

Author, Maintainer

Lucy Goodfellow

Author

Simon Proctor

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.0.2Latest
2025-06-10 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
0.0.1
2024-12-09
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-12-09
Total releases: 2 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Download size: 4.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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