paleotree call graph
Each node is a function, tinted by its test coverage so untested, complex code stands out. Shape encodes language, a ring marks exported functions, and dashed edges are calls from R into compiled code. Hover a node for detail; click to focus its neighborhood.
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Coverage
26% lines
Expression
25.2%
Tests
26.1%
Examples
47.5%
Vignettes
0.0%
By file
R/exhaustationFunctions.R
0%
R/createMrBayesTipDatingNexus.R
0%
R/hidden.makePBDBtaxonTree.Functions.R
0%
R/minCharChange.R
0%
R/createMrBayesTipCalibrations.R
0%
R/plotPhyloPicTree.R
0%
R/hidden.gettingPhyloPicFunctions.R
0%
R/resolveTreeChar.R
0%
R/dateTaxonTreePBDB.R
0%
R/taxonSortPBDBocc.R
0%
R/compareTimescaling.R
0%
R/perCapitaRates.R
0%
Structure
- Functions
- 248
- Exported
- 109
- Compiled
- 0
- Call edges
- 237
Functions ranked by lowest coverage
| Function | Language | Lines | Cyclomatic | Coverage |
|---|---|---|---|---|
| HurlbertPIE exp | R | 36 | 9 | 0.0% |
| accioBestAcquisitionModel exp | R | 58 | 12 | 0.0% |
| accioExhaustionCurve exp | R | 148 | 20 | 0.0% |
| addTermBranchLength exp | R | 18 | 4 | 0.0% |
| ancPropStateMat exp | R | 148 | 22 | 0.0% |
| bin_cal3TimePaleoPhy exp | R | 220 | 43 | 0.0% |
| bin_timePaleoPhy exp | R | 246 | 41 | 0.0% |
| bindPaleoTip exp | R | 87 | 20 | 0.0% |
| branchClasses exp | R | 59 | 6 | 0.0% |
| charExhaustPlot exp | R | 96 | 9 | 0.0% |
| collapseNodes exp | R | 35 | 10 | 0.0% |
| compareNodeAges exp | R | 132 | 16 | 0.0% |
| compareTermBranches exp | R | 30 | 3 | 0.0% |
| createMrBayesConstraints exp | R | 60 | 5 | 0.0% |
| createMrBayesTipCalibrations exp | R | 270 | 49 | 0.0% |
| createMrBayesTipDatingNexus exp | R | 491 | 64 | 0.0% |
| dateTaxonTreePBDB exp | R | 217 | 13 | 0.0% |
| deadTree exp | R | 15 | 1 | 0.0% |
| degradeTree exp | R | 38 | 11 | 0.0% |
| depthRainbow exp | R | 12 | 2 | 0.0% |