palaeoSig
Significance Tests for Palaeoenvironmental Reconstructions
Description
Several tests of quantitative palaeoenvironmental reconstructions from microfossil assemblages, including the null model tests of the statistically significant of reconstructions developed by Telford and Birks (2011) <doi:10.1016/j.quascirev.2011.03.002>, and tests of the effect of spatial autocorrelation on transfer function model performance using methods from Telford and Birks (2009) <doi:10.1016/j.quascirev.2008.12.020> and Trachsel and Telford (2016) <doi:10.5194/cp-12-1215-2016>. Age-depth models with generalized mixed-effect regression from Heegaard et al (2005) <doi:10.1191/0959683605hl836rr> are also included.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | ERROR |
| r-devel-linux-x86_64-fedora-gcc | ERROR |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
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re-building of vignette outputs
Error(s) in re-building vignettes:
--- re-building ‘h-block-crossvalidation.Rmd’ using rmarkdown
# A tibble: 1 × 1
RMSE
<dbl>
1 1.28
# A tibble: 1 × 1
h
<dbl>
1 600
# A tibble: 1 × 1
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<dbl>
1 600
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘h-block-crossvalidation.Rmd’
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘randomTF-spatial.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
SUMMARY: processing the following file failed:
‘randomTF-spatial.Rmd’
Error: Vignette re-building failed.
Execution halted
re-building of vignette outputs
Error(s) in re-building vignettes:
--- re-building ‘h-block-crossvalidation.Rmd’ using rmarkdown
# A tibble: 1 × 1
RMSE
<dbl>
1 1.28
# A tibble: 1 × 1
h
<dbl>
1 600
# A tibble: 1 × 1
h
<dbl>
1 600
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘h-block-crossvalidation.Rmd’
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘randomTF-spatial.Rmd’ using rmarkdown
SUMMARY: processing the following file failed:
‘randomTF-spatial.Rmd’
Error: Vignette re-building failed.
Execution halted
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Check History
ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 9, 2026
re-building of vignette outputs
Error(s) in re-building vignettes:
--- re-building ‘h-block-crossvalidation.Rmd’ using rmarkdown
# A tibble: 1 × 1
RMSE
<dbl>
1 1.28
# A tibble: 1 × 1
h
<dbl>
1 600
# A tibble: 1 × 1
h
<dbl>
1 600
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘h-block-crossvalidation.Rmd’
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘randomTF-spatial.Rmd’ using rmarkdown
OMP: Warning #96: Cannot fo
re-building of vignette outputs
Error(s) in re-building vignettes:
--- re-building ‘h-block-crossvalidation.Rmd’ using rmarkdown
# A tibble: 1 × 1
RMSE
<dbl>
1 1.28
# A tibble: 1 × 1
h
<dbl>
1 600
# A tibble: 1 × 1
h
<dbl>
1 600
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘h-block-crossvalidation.Rmd’
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘randomTF-spatial.Rmd’ using rmarkdown
SUMMARY: processing the fol