otuSummary
Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres
Description
Summarizes the taxonomic composition, diversity contribution of the rare and abundant community by using OTU (operational taxonomic unit) table which was generated by analyzing pipeline of 'QIIME' or 'mothur'. The rare biosphere in this package is subset by the relative abundance threshold (for details about rare biosphere please see Lynch and Neufeld (2015) <doi:10.1038/nrmicro3400>).
Downloads
301
Last 30 days
15468th
750
Last 90 days
3.7K
Last year
Trend: +42.7% (30d vs prior 30d)
0
Last 30 days
24
Last 90 days
95
Last year
Trend: -100% (30d vs prior 30d)
3
Last 7 days
19
Last 30 days
2
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Sizhong Yang <yanglzu@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Sizhong",
family = "Yang",
role = c("aut", "cre"),
email = "yanglzu@163.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Sizhong Yang <yanglzu@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Sizhong",
family = "Yang",
role = c("aut", "cre"),
email = "yanglzu@163.com")
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Sizhong Yang <yanglzu@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Sizhong",
family = "Yang",
role = c("aut", "cre"),
email = "yanglzu@163.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Sizhong Yang <yanglzu@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Sizhong",
family = "Yang",
role = c("aut", "cre"),
email = "yanglzu@163.com")
as necessary.
Code
Structure
Lines of code
1,515
Files
46
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
14
Internal functions
8
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
78.6%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
100%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
GPL (>= 3)
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2018-06-19
Latest release
2023-09-05
Avg cadence
952 days
Cold removal rate
100%
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.