odeGUTS

1.1.0

Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using Compiled Code

1packages depend

3.5Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Carlo RomoliFirst published 2021-08-135 releasesCRAN page ↗GitHub ↗

Allows performing forwards prediction for the General Unified Threshold model of Survival using compiled ode code. This package was created to avoid dependency with the 'morse' package that requires the installation of 'JAGS'. This package is based on functions from the 'morse' package v3.3.1: Virgile Baudrot, Sandrine Charles, Marie Laure Delignette-Muller, Wandrille Duchemin, Benoit Goussen, Nils Kehrein, Guillaume Kon-Kam-King, Christelle Lopes, Philippe Ruiz, Alexander Singer and Philippe Veber (2021) https://CRAN.R-project.org/package=morse.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("odeGUTS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("bgoussen/odeGUTS")

Development version from bgoussen/odeGUTS. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-odeguts

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-odeGUTS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-odeGUTS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.1 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

75%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 173 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 20%

Downloads

3.5K

CRAN downloads in the past year

Rank #15,108 · ~10/day · ~290/mo

Releases R versions

Daily download trend is not available in this view yet.

20030 days

69590 days

3.5K1 year

Compare downloads with other packages →

Also on431 r2u

Repository

GitHub ↗ bgoussen/odeguts

2Stars

1Forks

0Open issues

0Open PRs

6Releases

39Commits

1Contributors

License GPL-3.0 · 39 commits · Last activity 2025-11-05

Stars over time

2021-08-12 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/bgoussen/odeguts on 2026-07-31.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (6)

deSolve magrittrstatsdplyr zoo tidyr

LinkingTo (0)

none

Suggests (1)

morse

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

BeeGUTS

Code & Tests

People & History

People (2)

Maintainer (1)

Carlo Romoli

Maintainer · added in 1.1.0

Authors (1)

Benoit Goussen

Author

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.1.0Latest
2025-11-05 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.3
2024-10-04 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.2
2023-04-30 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0.1
2021-09-10 · diff ↗
1.0.0
2021-08-13
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-08-13
Total releases: 5 / 5 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 20 KB / 1 file
Download size: 39 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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