numberofalleles call graph
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Coverage
72% lines
Expression
74.8%
Tests
71.8%
Examples
66.2%
Vignettes
43.9%
By file
R/read_allele_freqs.R
0%
R/plot.pf.R
0%
R/utilities.R
0%
R/pr_independent_alleles_ped.R
33%
R/mean.pf.R
50%
R/pr_total_number_of_alleles.R
65%
R/pr_number_of_distinct_alleles.R
68%
R/moments_number_of_distinct_alleles.R
80%
R/var.pf.R
82%
R/pr_independent_alleles.R
82%
R/compute_pr_of_sum.R
100%
Structure
- Functions
- 44
- Exported
- 8
- Compiled
- 18
- Call edges
- 41
Functions ranked by lowest coverage
| Function | Language | Lines | Cyclomatic | Coverage |
|---|---|---|---|---|
| pr_independent_alleles_ped exp | R | 84 | 9 | 0.0% |
| read_allele_freqs exp | R | 34 | 4 | 0.0% |
| columns | R | 1 | 1 | 0.0% |
| get_number_of_unique_alleles | R | 1 | 1 | 0.0% |
| plot.pf | R | 30 | 4 | 0.0% |
| mean.pf | R | 5 | 2 | 50.0% |
| moments_check_arguments | R | 42 | 11 | 50.0% |
| pr_total_number_of_distinct_alleles exp | R | 144 | 20 | 65.3% |
| var exp | R | 8 | 2 | 66.7% |
| pr_number_of_distinct_alleles exp | R | 69 | 14 | 67.6% |
| pr_independent_alleles exp | R | 30 | 4 | 82.4% |
| expected_number_of_distinct_alleles exp | R | 14 | 2 | 83.3% |
| var.pf | R | 16 | 2 | 87.5% |
| variance_number_of_distinct_alleles exp | R | 27 | 3 | 100.0% |
| compute_cov | R | 3 | 1 | 100.0% |
| compute_p0 | R | 10 | 2 | 100.0% |
| compute_p0_a | R | 3 | 1 | 100.0% |
| compute_p0_a_given_b0 | R | 9 | 2 | 100.0% |
| compute_p_ia1_ib1 | R | 7 | 1 | 100.0% |
| compute_pr_of_sum | R | 20 | 4 | 100.0% |