naryn

2.6.34

Native Access Medical Record Retriever for High Yield Analytics

0packages depend

2.6Kdownloads / year

15.6%test coverage

7/10checks pass

Overview

About

Maintained by Aviezer LifshitzFirst published 2022-10-1312 releasesCRAN page ↗GitHub ↗

A toolkit for medical records data analysis. The 'naryn' package implements an efficient data structure for storing medical records, and provides a set of functions for data extraction, manipulation and analysis.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("naryn", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("tanaylab/naryn")

Development version from tanaylab/naryn. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-naryn

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-naryn

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

3NOTE7OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-gcc

Slowest check: 4.7 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 1.43

15.6%

Coverage · measured lines

99%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-07-16
9 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-08
10 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-07
9 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
10 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-10
9 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-09
8 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
9 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 60 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 97%
Documented parameters: 91%
Return-value docs: 99%
References docs: 0%

Downloads

2.6K

CRAN downloads in the past year

Rank #14,867 · ~7/day · ~213/mo

Releases R versions

Daily download trend is not available in this view yet.

15030 days

71790 days

2.6K1 year

Compare downloads with other packages →

Also on455 r2u26 autocran

Repository

GitHub ↗ tanaylab/naryn

3Stars

0Forks

10Open issues

2Open PRs

11Releases

228Commits

6Contributors

data-analysismedical-records

228 commits · Last activity 2026-07-27

Stars over time

2023-01-18 · 22026-07-07 · 3

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/tanaylab/naryn on 2026-07-26.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

21 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.0.0utils

Imports (9)

dplyr glue lifecycle magrittrparallelpurrr stringr tidyr yaml

LinkingTo (0)

none

Suggests (14)

brio callr devtools forcats knitr readr rlang rmarkdown spelling testthat ggplot2 tibbletoolswithr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (6)

Maintainer (1)

Aviezer Lifshitz

Author, Maintainer

Authors (3)

Aviezer Lifshitz

Author, Maintainer

Ben Gilat

Author

Misha Hoichman

Author

Contributors (2)

Rami Jaschek

Contributor

Netta Mendelson-Cohen

Contributor

Weizmann Institute of Science

Package Timeline

12 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.6.34Latest
2026-03-20 · current release · diff ↗
2.6.32
2026-01-19 · diff ↗
2.6.31
2025-11-11 · diff ↗
R
R 4.5.0 released · 2025-04-11
2.6.30
2024-09-27 · diff ↗
R
R 4.4.0 released · 2024-04-24
2.6.26
2024-01-15 · diff ↗
2.6.25
2023-11-30 · diff ↗
2.6.23
2023-08-18 · diff ↗
unarchivedReturned to CRAN
2023-08-18
archivedRemoved from CRAN
2023-06-16
issues were not corrected in time
2.6.21
2023-06-02 · diff ↗
R
R 4.3.0 released · 2023-04-21
2.6.14
2023-01-09 · diff ↗
2.6.13
2022-12-14 · diff ↗

Show 5 earlier events

2.6.12
2022-11-22 · diff ↗
unarchivedReturned to CRAN
2022-11-22
archivedRemoved from CRAN
2022-10-30
issues were not corrected in re-submissions
2.6.9
2022-10-13
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-10-13
Total releases: 12 / 4 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.0.0
Download size: 289 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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