mully

2.1.38

Create, Modify and Visualize Multi-Layered Networks

0packages depend

3Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Zaynab HammoudFirst published 2020-11-186 releasesCRAN page ↗GitHub ↗

Allows the user to create graphs with multiple layers. The user can also modify the layers, the nodes, and the edges. The graph can also be visualized. Zaynab Hammoud and Frank Kramer (2018) doi:10.3390/genes9110519. More about multilayered graphs and their usage can be found in our review paper: Zaynab Hammoud and Frank Kramer (2020) doi:10.1186/s41044-020-00046-0.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("mully", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("frankkramer-lab/mully")

Development version from frankkramer-lab/mully. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mully

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-mully

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 2.3 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-08
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-06-07
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 496 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 95%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

CRAN downloads in the past year

Rank #16,066 · ~8/day · ~252/mo

Releases R versions

Daily download trend is not available in this view yet.

16330 days

66390 days

3K1 year

Compare downloads with other packages →

Also on86 r2u

Repository

GitHub ↗ frankkramer-lab/mully

45Stars

5Forks

1Open issues

1Open PRs

4Releases

118Commits

3Contributors

multilayer-networksgraph-theorydata-visualizationgraphsigraphnode-colored-graphsbig-networks

118 commits · Last activity 2023-02-22

Stars over time

2024-03-31 · 452026-07-07 · 45

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/frankkramer-lab/mully on 2026-07-31.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (5)

igraph rgl randomcoloRgraphicsstats

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Zaynab Hammoud

Author, Maintainer

Authors (1)

Zaynab Hammoud

Author, Maintainer

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
2.1.38Latest
2023-02-22 · current release · diff ↗
unarchivedReturned to CRAN
2023-02-22
archivedRemoved from CRAN
2023-02-02
issues were not corrected in time
R
R 4.2.0 released · 2022-04-22
2.1.34
2021-10-14 · diff ↗
2.1.33
2021-06-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
2.1.31
2021-01-06 · diff ↗
2.1.30
2020-12-15 · diff ↗
2.1.26
2020-11-18
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-11-18
Total releases: 6 / 6 yrs
License: GPL (>= 2) OSI
Download size: 324 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →