msSPChelpR

0.9.1

Helper Functions for Second Primary Cancer Analyses

0packages depend

3.2Kdownloads / year

3.7%test coverage

12/13checks pass

Overview

About

Maintained by Marian EberlFirst published 2020-11-044 releasesCRAN page ↗GitHub ↗

A collection of helper functions for analyzing Second Primary Cancer data, including functions to reshape data, to calculate patient states and analyze cancer incidence.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("msSPChelpR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("marianschmidt/msSPChelpR")

Development version from marianschmidt/msSPChelpR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-msspchelpr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-msSPChelpR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-msSPChelpR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.3 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.01

3.7%

Coverage · measured lines

96%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 113 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 99%
Return-value docs: 91%
References docs: 3%

Downloads

3.2K

CRAN downloads in the past year

Rank #12,847 · ~9/day · ~271/mo

Releases R versions

Daily download trend is not available in this view yet.

29830 days

79390 days

3.2K1 year

Compare downloads with other packages →

Also on148 r2u2 autocran

Repository

GitHub ↗ marianschmidt/msspchelpr

2Stars

2Forks

21Open issues

0Open PRs

5Releases

661Commits

2Contributors

License GPL-3.0 · 661 commits · Last activity 2024-01-24

Stars over time

2024-01-27 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/marianschmidt/msspchelpr on 2026-07-31.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (11)

cli dplyr lubridate magrittr purrr rlang (>= 0.1.2)sjlabelled stringr tidyselect tidytable tidyr

LinkingTo (0)

none

Suggests (5)

haven tibble rmarkdown knitr testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Marian Eberl

Author, Maintainer

Authors (1)

Marian Eberl

Author, Maintainer

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.9.1Latest
2024-01-23 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
0.9.0
2022-06-11 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.8.7
2021-07-01 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.8.6
2020-11-04
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-11-04
Total releases: 4 / 6 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 1.6 MB / 4 files
Download size: 1.7 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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