morseTKTD

0.1.3

Bayesian Inference of TKTD Models

0packages depend

2.2Kdownloads / year

44.6%test coverage

13/13checks pass

Overview

About

Maintained by Virgile BaudrotFirst published 2025-06-041 releasesCRAN page ↗

Advanced methods for a valuable quantitative environmental risk assessment using Bayesian inference of survival Data with toxicokinetics toxicodynamics (TKTD) models. Among others, it facilitates Bayesian inference of the general unified threshold model of survival (GUTS). See models description in Jager et al. (2011) doi:10.1021/es103092a and implementation using Bayesian inference in Baudrot and Charles (2019) doi:10.1038/s41598-019-47698-0.

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("morseTKTD", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-morsetktd

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-morseTKTD

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 17.6 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.35

44.6%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-07-29
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-27
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 3 earlier snapshots

NOTE2026-04-22
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 254 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: 100%
Return-value docs: 100%
References docs: 28%

Downloads

2.2K

CRAN downloads in the past year

Rank #15,495 · ~6/day · ~187/mo

Releases R versions

Daily download trend is not available in this view yet.

31630 days

69690 days

2.2K1 year

Compare downloads with other packages →

Also on406 r2u41 autocran

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (10)

deSolve ggplot2 gridExtramethodsRcpp RcppParallel rstan rstantools (>= 2.4.0)testthat zoo

LinkingTo (6)

BH Rcpp RcppEigen RcppParallel rstan StanHeaders (>= 2.18.0)

Suggests (3)

knitr rmarkdown xml2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (9)

Maintainer (1)

Virgile Baudrot

Author, Maintainer

Authors (4)

Virgile Baudrot

Author, Maintainer

Sandrine Charles

Author

Marie Laure Delignette-Muller

Author

Philippe Veber

Author

Contributors (5)

Benoit Goussen

Contributor

Nils Kehrein

Contributor

Guillaume Kon-Kam-King

Contributor

Christelle Lopes

Contributor

Alexander Singer

Contributor

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.3Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-06-04
Total releases: 1 / 1 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Bundled data: 108 KB / 9 files
Download size: 885 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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