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monomvn

Estimation for MVN and Student-t Data with Monotone Missingness

v1.9-21 · Sep 23, 2024 · LGPL

Description

Estimation of multivariate normal (MVN) and student-t data of arbitrary dimension where the pattern of missing data is monotone. See Pantaleo and Gramacy (2010) <doi:10.48550/arXiv.0907.2135>. Through the use of parsimonious/shrinkage regressions (plsr, pcr, lasso, ridge, etc.), where standard regressions fail, the package can handle a nearly arbitrary amount of missing data. The current version supports maximum likelihood inference and a full Bayesian approach employing scale-mixtures for Gibbs sampling. Monotone data augmentation extends this Bayesian approach to arbitrary missingness patterns. A fully functional standalone interface to the Bayesian lasso (from Park & Casella), Normal-Gamma (from Griffin & Brown), Horseshoe (from Carvalho, Polson, & Scott), and ridge regression with model selection via Reversible Jump, and student-t errors (from Geweke) is also provided.

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Last 90 days

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r2u CRAN

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Last 90 days

468

Last year

Trend: -39.5% (30d vs prior 30d)

autoCRAN

4

Last 7 days

17

Last 30 days

4

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

15,943

Files

69

Compiled share

63.6%

Has compiled src

Yes

Language breakdown

R 3,633 (22.8%)C/C++/src 10,134 (63.6%)Docs 2,176 (13.6%)

API

Exported functions

15

Internal functions

15

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

90.9%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.14.0

System requirements

C++ standard

License

LGPL

License flags

not SPDX, not OSI

History

Versions

66

First release

2007-06-11

Latest release

2024-09-23

Avg cadence

42 days

Cold removal rate

100%

Dep drift

4

LOC over versions

v1.0: 1,205 LOCv1.0-1: 1,205 LOCv2.5.1: 1,205 LOCv1.0-2: 1,219 LOCv1.0-3: 1,235 LOCv1.1: 1,448 LOCv2.6.0: 1,502 LOCv1.1-1: 1,502 LOCv1.1-2: 1,663 LOCv2.6.1: 1,702 LOCv1.1-4: 1,702 LOCv2.7.0: 14,770 LOCv1.2: 7,591 LOCv2.7.1: 15,178 LOCv1.3: 8,793 LOCv1.3-1: 9,516 LOCv1.4: 10,361 LOCv1.4-1: 10,452 LOCv1.5: 12,271 LOCv1.6: 13,616 LOCv1.6-1: 13,756 LOCv1.7: 14,770 LOCv1.7-1: 15,128 LOCv1.7-2: 15,178 LOCv2.10.0: 15,252 LOCv1.7-3: 15,252 LOCv2.10.1: 15,273 LOCv1.7-4: 15,273 LOCv1.8: 15,807 LOCv2.11.0: 15,857 LOCv1.8-1: 15,807 LOCv1.8-2: 15,807 LOCv1.8-3: 15,807 LOCv1.8-4: 15,856 LOCv1.8-5: 15,857 LOCv2.13.1: 15,961 LOCv1.8-6: 15,961 LOCv1.8-7: 15,936 LOCv2.14.1: 15,935 LOCv1.8-8: 15,935 LOCv1.8-9: 15,934 LOCv2.14.2: 15,934 LOCv1.8-10: 15,986 LOCv2.15.1: 16,096 LOCv1.9: 16,096 LOCv1.9-1: 16,094 LOCv1.9-2: 15,944 LOCv1.9-3: 15,932 LOCv2.15.2: 15,932 LOCv3.0.1: 15,932 LOCv1.9-4: 15,932 LOCv1.9-5: 15,937 LOCv1.9-6: 15,932 LOCv1.9-7: 15,932 LOCv1.9-8: 15,992 LOCv1.9-9: 15,989 LOCv1.9-10: 15,939 LOCv1.9-13: 15,939 LOCv1.9-14: 15,939 LOCv1.9-15: 15,943 LOCv1.9-16: 15,917 LOCv1.9-17: 15,917 LOCv1.9-18: 15,942 LOCv1.9-19: 15,942 LOCv1.9-20: 15,942 LOCv1.9-21: 15,943 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Reverse Dependencies (3)

Dependency Network

Dependencies Reverse dependencies pls lars MASS quadprog mvtnorm BayesianLasso hetGP tidyfit monomvn

Version History

53 tracked
new 1.9-21 Mar 10, 2026
updated 1.9-21 ← 1.9-20 diff Sep 22, 2024
updated 1.9-20 ← 1.9-19 diff Jan 10, 2024
updated 1.9-19 ← 1.9-18 diff Nov 27, 2023
updated 1.9-18 ← 1.9-17 diff Aug 20, 2023
updated 1.9-17 ← 1.9-16 diff Jan 5, 2023
updated 1.9-16 ← 1.9-15 diff Oct 19, 2022
updated 1.9-15 ← 1.9-14 diff Apr 5, 2022
updated 1.9-14 ← 1.9-13 diff Mar 29, 2022
updated 1.9-13 ← 1.9-10 diff Nov 27, 2019
updated 1.9-10 ← 1.9-9 diff Jun 10, 2019
updated 1.9-9 ← 1.9-8 diff Mar 6, 2019
updated 1.9-8 ← 1.9-7 diff Sep 13, 2018
updated 1.9-7 ← 1.9-6 diff Jan 7, 2017
updated 1.9-6 ← 1.9-5 diff Feb 10, 2016