This package was removed from CRAN on 2025-03-21. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 0.4.4, its last release before removal.

miWQS

0.4.4

Multiple Imputation Using Weighted Quantile Sum Regression

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Paul M. Hargarten5 releasesCRAN page ↗

The miWQS package handles the uncertainty due to below the detection limit in a correlated component mixture problem. Researchers want to determine if a set/mixture of continuous and correlated components/chemicals is associated with an outcome and if so, which components are important in that mixture. These components share a common outcome but are interval-censored between zero and low thresholds, or detection limits, that may be different across the components. This package applies the multiple imputation (MI) procedure to the weighted quantile sum regression (WQS) methodology for continuous, binary, or count outcomes (Hargarten & Wheeler (2020) doi:10.1016/j.envres.2020.109466). The imputation models are: bootstrapping imputation (Lubin et.al (2004) doi:10.1289/ehp.7199), univariate Bayesian imputation (Hargarten & Wheeler (2020) doi:10.1016/j.envres.2020.109466), and multivariate Bayesian regression imputation.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/miWQS/miWQS_0.4.4.tar.gz"
pkgFile <- "miWQS_0.4.4.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.4.4) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-miwqs

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-miWQS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.02

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 94%
Documented parameters: 96%
Return-value docs: 92%
References docs: 29%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on80 r2u13 autocran57 c2d4u

Dependencies

Declared dependencies

28 external dependencies (excludes base and recommended)

Depends (5)

R >= 3.5.0methodsparallelstatsutils

Imports (18)

coda condMVNorm ggplot2 (>= 3.1.0)glm2 Hmisc invgammaMASSmatrixNormal MCMCpack mvtnorm purrr rlist Rsolnpsurvivaltidyr tmvmixnorm tmvtnorm truncnorm (>= 1.0-8)

LinkingTo (0)

none

Suggests (12)

formatR GGally knitr mice norm pander rmarkdown scales (>= 1.0.0)sessioninfo spelling testthat (>= 2.0.1)wqs

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 5,169 (80%)Rd 1,194 (18%)Markdown 61 (1%)Vignettes 52 (1%)Other 19 (0%)

Code characteristics

Object systems

S33

Cyclomatic complexity: 4.0 median / 25 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

54 12 exported

Complexity

5 avg / 25 max

Call network

54 nodes / 49 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (2)

Maintainer (1)

Paul M. Hargarten

Author, Maintainer

Authors (2)

Paul M. Hargarten

Author, Maintainer

David C. Wheeler

Author, Reviewer, Thesis advisor

Reviewers (1)

David C. Wheeler

Author, Reviewer, Thesis advisor

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2025-03-21
issues were not corrected in time
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.4.4
2021-04-02 · diff ↗
0.4.2
2021-01-21 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.2.0
2019-12-12 · diff ↗
0.1.0
2019-07-31 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.0.9
2018-12-23
R
R 3.5.0 released · 2018-04-23

Package metadata

Total releases: 5
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 115 KB / 2 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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