miLineage
Association Tests for Microbial Lineages on a Taxonomic Tree
Description
A variety of association tests for microbiome data analysis including Quasi-Conditional Association Tests (QCAT) described in Tang Z.-Z. et al.(2017) <doi:10.1093/bioinformatics/btw804> and Zero-Inflated Generalized Dirichlet Multinomial (ZIGDM) tests described in Tang Z.-Z. & Chen G. (2017, submitted).
Downloads
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605
Last 90 days
3.1K
Last year
Trend: +100% (30d vs prior 30d)
0
Last 30 days
24
Last 90 days
95
Last year
Trend: -100% (30d vs prior 30d)
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Zheng-Zheng",
family = "Tang",
role = c("aut", "cre"),
email = "tang@biostat.wisc.edu")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Zheng-Zheng",
family = "Tang",
role = c("aut", "cre"),
email = "tang@biostat.wisc.edu")
as necessary.
Check History
NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
CRAN incoming feasibility
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Zheng-Zheng",
family = "Tang",
role = c("aut", "cre"),
email = "tang@biostat.wisc.edu")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Zheng-Zheng",
family = "Tang",
role = c("aut", "cre"),
email = "tang@biostat.wisc.edu")
as necessary.
ERROR 11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
CRAN incoming feasibility
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Zheng-Zheng",
family = "Tang",
role = c("aut", "cre"),
email = "tang@biostat.wisc.edu")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Zheng-Zheng",
family = "Tang",
role = c("aut", "cre"),
email = "tang@biostat.wisc.edu")
as necessary.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Zheng-Zheng",
family = "Tang",
role = c("aut", "cre"),
email = "tang@biostat.wisc.edu")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Zheng-Zheng",
family = "Tang",
role = c("aut", "cre"),
email = "tang@biostat.wisc.edu")
as necessary.
Code & tests
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
6,747
Files
12
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
3
Internal functions
55
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
–
\dontrun example ratio
0%
Roxygen coverage
–
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.1.1
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2017-10-20
Latest release
2018-03-22
Avg cadence
153 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.