mappestRisk

0.1.2

Create Maps Forecasting Risk of Pest Occurrence

0packages depend

1.5Kdownloads / year

88.9%test coverage

12/13checks pass

Overview

About

Maintained by Darío San-Segundo MolinaFirst published 2025-11-191 releasesCRAN page ↗GitHub ↗

There are three different modules: (1) model fitting and selection using a set of the most commonly used equations describing developmental responses to temperature helped by already existing R packages ('rTPC') and nonlinear regression model functions from 'nls.multstart' (Padfield et al. 2021, doi:10.1111/2041-210X.13585), with visualization of model predictions to guide ecological criteria for model selection; (2) calculation of suitability thermal limits, which consist on a temperature interval delimiting the optimal performance zone or suitability; and (3) climatic data extraction and visualization inspired on previous research (Taylor et al. 2019, doi:10.1111/1365-2664.13455), with either exportable rasters, static map images or html, interactive maps.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("mappestRisk", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("EcologyR/mappestRisk")

Development version from EcologyR/mappestRisk. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mappestrisk

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-mappestRisk

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-mappestRisk

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.8 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.54

88.9%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 1,048 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 45%

Downloads

1.5K

CRAN downloads in the past year

Rank #21,500 · ~4/day · ~127/mo

Releases R versions

Daily download trend is not available in this view yet.

17730 days

51890 days

1.5K1 year

Compare downloads with other packages →

Also on49 r2u

Repository

GitHub ↗ ecologyr/mappestrisk

3Stars

0Forks

5Open issues

0Open PRs

1Releases

472Commits

7Contributors

License GPL-3.0 · 472 commits · Last activity 2026-07-09 · 0% stars, 30d

Stars over time

2025-03-11 · 22026-07-07 · 3

Repository practices

Upstream repositoryBeta

8 development-tooling and community-health practices detected across 8 families in the upstream repository

Checks run against github.com/ecologyr/mappestrisk on 2026-07-31.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Research and citation (1)

CITATION.cff

Automation and maintenance (1)

Dependabot

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.3.0

Imports (10)

dplyr geodata ggplot2 khroma nls.multstart progress purrr rTPC terra tidyr

LinkingTo (0)

none

Suggests (3)

covr leaflet testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Darío San-Segundo Molina

Author, Maintainer, Copyright holder

Authors (4)

Darío San-Segundo Molina

Author, Maintainer, Copyright holder

A. Márcia Barbosa

Author, Copyright holder

Antonio Jesús Pérez-Luque

Author, Copyright holder

Francisco Rodríguez-Sánchez

Author, Copyright holder

Darío San-Segundo Molina

Author, Maintainer, Copyright holder

A. Márcia Barbosa

Author, Copyright holder

Antonio Jesús Pérez-Luque

Author, Copyright holder

Francisco Rodríguez-Sánchez

Author, Copyright holder

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.2Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-11-19
Total releases: 1 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.3.0
Bundled data: 2.9 KB / 3 files
Download size: 285 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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