mapme.biodiversity

0.9.6

Efficient Monitoring of Global Biodiversity Portfolios

1packages depend

6.7Kdownloads / year

85.1%test coverage

13/13checks pass

Overview

About

Maintained by Zivan KaramanFirst published 2022-04-1919 releasesCRAN page ↗GitHub ↗

Biodiversity areas, especially primary forest, serve a multitude of functions for local economy, regional functionality of the ecosystems as well as the global health of our planet. Recently, adverse changes in human land use practices and climatic responses to increased greenhouse gas emissions, put these biodiversity areas under a variety of different threats. The present package helps to analyse a number of biodiversity indicators based on freely available geographical datasets. It supports computational efficient routines that allow the analysis of potentially global biodiversity portfolios. The primary use case of the package is to support evidence based reporting of an organization's effort to protect biodiversity areas under threat and to identify regions were intervention is most duly needed.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("mapme.biodiversity", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mapme-initiative/mapme.biodiversity")

Development version from mapme-initiative/mapme.biodiversity. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mapme.biodiversity

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-mapme.biodiversity

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-mapme.biodiversity

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 9.8 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.34

85.1%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-07-13
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-11
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-16
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-15
12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 1,975 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 95%
References docs: 42%

Downloads

6.7K

CRAN downloads in the past year

Rank #4,846 · ~18/day · ~559/mo

Releases R versions

Daily download trend is not available in this view yet.

44330 days

1.9K90 days

6.7K1 year

Compare downloads with other packages →

Also on121 r2u35 autocran39 c2d4u

Repository

GitHub ↗ mapme-initiative/mapme.biodiversity

51Stars

12Forks

17Open issues

0Open PRs

20Releases

992Commits

10Contributors

environmenteogismapmespatialsustainability

License GPL-3.0 · 992 commits · Last activity 2026-07-22 · +4.1% stars, 30d

Stars over time

2025-05-14 · 392026-07-07 · 50

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/mapme-initiative/mapme.biodiversity on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

Docs source (1)

README.Rmd

Automation and maintenance (1)

pre-commit

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (12)

curl dplyr furrr httr2 jsonlite magrittr purrr sf terra tibble tidyrutils

LinkingTo (0)

none

Suggests (9)

exactextractr future knitr landscapemetrics progressr rmarkdown rstac rvest testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

biofetchR

Code & Tests

Code Composition

R 12,797 (71%)Rd 4,674 (26%)Vignettes 394 (2%)Markdown 105 (1%)

Code characteristics

Cyclomatic complexity: 2.0 median / 15 max
Test cases: 111 / 0.34 per code line
System requirements: 2 external

Test coverage

Line coverage

85%

Expression

83.0%

Tests / Examples

85.1% / 3% ex

Functions

185 95 exported

Complexity

2.9 avg / 15 max

Call network

185 nodes / 343 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

185 functions

Function	Cyclo	Coverage
calc_precipitation_chirps exp	4	0%
calc_soilproperties exp	2	0%
get_chirps exp	1	0%
get_ipbes_biomes exp	1	0%
get_soilgrids exp	7	0%
.check_system_requirements	1	0%

People & History

People (6)

Maintainer (1)

Zivan Karaman

Contributor, Maintainer · added in 0.9.4

Authors (2)

Om Prakash Bhandari

Author

Darius A. Görgen

Author

Contributors (3)

Zivan Karaman

Contributor, Maintainer · added in 0.9.4

Sven Bergtold

Contributor · added in 0.9.4

Andreas Petutschnig

Contributor · added in 0.9.2

MAPME-Initiative

Funders (1)

MAPME-Initiative

Listed in earlier versions (1)

Darius A. G\u00F6rgen

no longer listed · 0.9.0 to 0.9.6

Package Timeline

19 releases. Pick two to compare their code metrics. R releases are shown for context.

0.9.6Latest
2026-04-27 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.9.5
2025-10-06 · diff ↗
0.9.4
2025-04-28 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.9.3
2024-10-21 · diff ↗
0.9.2
2024-10-10 · diff ↗
0.9.1
2024-09-02 · diff ↗
0.9.0
2024-08-27 · diff ↗
0.8.0
2024-07-03 · diff ↗
0.7.0
2024-05-31 · diff ↗
0.6.0
2024-04-30 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.5.0
2024-01-08 · diff ↗
0.4.0
2023-08-28 · diff ↗
R
R 4.3.0 released · 2023-04-21

Show 9 earlier events

0.3.0
2023-01-21 · diff ↗
0.2.1
2022-09-09 · diff ↗
0.2.0
2022-08-23 · diff ↗
0.1.2
2022-06-24 · diff ↗
0.1.1
2022-05-02 · diff ↗
0.1.0
2022-04-27 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.0.1
2022-04-19
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-04-19
Total releases: 19 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Download size: 674 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Analysis of Spatial Data

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