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mRMRe

Parallelized Minimum Redundancy, Maximum Relevance (mRMR)

v2.1.2.2 · Nov 4, 2024 · Artistic-2.0

Description

Computes mutual information matrices from continuous, categorical and survival variables, as well as feature selection with minimum redundancy, maximum relevance (mRMR) and a new ensemble mRMR technique. Published in De Jay et al. (2013) <doi:10.1093/bioinformatics/btt383>.

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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 NOTE
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 NOTE
r-release-macos-arm64 NOTE
r-release-macos-x86_64 NOTE
r-release-windows-x86_64 NOTE
Check details (16 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-release-macos-arm64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-release-macos-arm64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow
NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the follow

Reverse Dependencies (5)

imports

Dependency Network

Dependencies Reverse dependencies survival igraph UBayFS FRESA.CAD mlr mlrCPO tidyfit mRMRe

Version History

new 2.1.2.2 Mar 9, 2026