longmixr

1.0.0

Longitudinal Consensus Clustering with 'flexmix'

0packages depend

2.9Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Jonas HagenbergFirst published 2022-01-131 releasesCRAN page ↗GitHub ↗

An adaption of the consensus clustering approach from 'ConsensusClusterPlus' for longitudinal data. The longitudinal data is clustered with flexible mixture models from 'flexmix', while the consensus matrices are hierarchically clustered as in 'ConsensusClusterPlus'. By using the flexibility from 'flexmix' and 'FactoMineR', one can use mixed data types for the clustering.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("longmixr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("cellmapslab/longmixr")

Development version from cellmapslab/longmixr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-longmixr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 4.0 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.57

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 366 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 82%
Return-value docs: 100%
References docs: 0%

Downloads

2.9K

CRAN downloads in the past year

Rank #13,230 · ~8/day · ~243/mo

Releases R versions

Daily download trend is not available in this view yet.

24430 days

81690 days

2.9K1 year

Compare downloads with other packages →

Also on146 r2u

Repository

GitHub ↗ cellmapslab/longmixr

4Stars

1Forks

0Open issues

0Open PRs

1Releases

88Commits

2Contributors

License GPL-2.0 · 88 commits · Last activity 2024-02-06

Stars over time

2025-06-02 · 42026-07-07 · 4

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/cellmapslab/longmixr on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (8)

checkmate ConsensusClusterPlusgraphicsgrDevicesflexmix StatMatchstatsutils

LinkingTo (0)

none

Suggests (11)

testthat knitr rmarkdown dplyr tidyr ggplot2 ggalluvial FactoMineR factoextra lme4 purrr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,803 (64%)Vignettes 628 (22%)Rd 373 (13%)

Code characteristics

Object systems

S31

Cyclomatic complexity: 3.0 median / 12 max
Test cases: 24 / 0.57 per code line

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

15 4 exported

Complexity

3.6 avg / 12 max

Call network

15 nodes / 13 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 1

Name	Class	Rows × Cols	Also ships in
fake_questionnaire_data	data.frame	400 × 20	–

People & History

People (4)

Maintainer (1)

Jonas Hagenberg

Author, Maintainer

Authors (3)

Jonas Hagenberg

Author, Maintainer

Peter Waltman

Author, Copyright holder

Matt Wilkerson

Author, Copyright holder

Peter Waltman

Author, Copyright holder

Matt Wilkerson

Author, Copyright holder

Max Planck Institute of Psychiatry

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2022-01-13
Total releases: 1 / 4 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 20 KB / 1 file
Download size: 2.1 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →