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lipidomeR

Integrative Visualizations of the Lipidome

v0.1.2 · Mar 15, 2020 · GPL-3

Description

Create lipidome-wide heatmaps of statistics with the 'lipidomeR'. The 'lipidomeR' provides a streamlined pipeline for the systematic interpretation of the lipidome through publication-ready visualizations of regression models fitted on lipidomics data. With 'lipidomeR', associations between covariates and the lipidome can be interpreted systematically and intuitively through heatmaps, where lipids are categorized by the lipid class and are presented on two-dimensional maps organized by the lipid size and level of saturation. This way, the 'lipidomeR' helps you gain an immediate understanding of the multivariate patterns in the lipidome already at first glance. You can create lipidome-wide heatmaps of statistical associations, changes, differences, variation, or other lipid-specific values. The heatmaps are provided with publication-ready quality and the results behind the visualizations are based on rigorous statistical models.

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CRAN Check Status

2 NOTE
12 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Tommi Suvitaival <TSUV0001@RegionH.DK>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cancerlipidome.Rd’:
    http://dx.doi.org/10.21228/M8RX01
    https://doi.org/10.3390/metabo8030041
  File ‘humanlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://doi.org/10.1194/jlr.M009449
  File ‘liverlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://dx.doi.org/10.1194/jlr.P056002
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Tommi Suvitaival <TSUV0001@RegionH.DK>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cancerlipidome.Rd’:
    http://dx.doi.org/10.21228/M8RX01
    https://doi.org/10.3390/metabo8030041
  File ‘humanlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://doi.org/10.1194/jlr.M009449
  File ‘liverlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://dx.doi.org/10.1194/jlr.P056002
OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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OK r-oldrel-macos-arm64

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OK r-oldrel-macos-x86_64

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OK r-oldrel-windows-x86_64

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OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Tommi Suvitaival <TSUV0001@RegionH.DK>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cancerlipidome.Rd’:
    http://dx.doi.org/10.21228/M8RX01
    https://doi.org/10.3390/metabo8030041
  File ‘humanlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://doi.org/10.1194/jlr.M009449
  File ‘liverlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://dx.doi.org/10.1194/jlr.P056002
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Tommi Suvitaival <TSUV0001@RegionH.DK>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cancerlipidome.Rd’:
    http://dx.doi.org/10.21228/M8RX01
    https://doi.org/10.3390/metabo8030041
  File ‘humanlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://doi.org/10.1194/jlr.M009449
  File ‘liverlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://dx.doi.org/10.1194/jlr.P056002

Dependency Network

Dependencies Reverse dependencies BiocManager dplyr ggplot2 knitr limma reshape2 shadowtext stringr tableone tidyr lipidomeR

Version History

new 0.1.2 Mar 9, 2026