lipidomeR

0.1.2

Integrative Visualizations of the Lipidome

0packages depend

2.9Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Tommi SuvitaivalFirst published 2020-03-151 releasesCRAN page ↗

Create lipidome-wide heatmaps of statistics with the 'lipidomeR'. The 'lipidomeR' provides a streamlined pipeline for the systematic interpretation of the lipidome through publication-ready visualizations of regression models fitted on lipidomics data. With 'lipidomeR', associations between covariates and the lipidome can be interpreted systematically and intuitively through heatmaps, where lipids are categorized by the lipid class and are presented on two-dimensional maps organized by the lipid size and level of saturation. This way, the 'lipidomeR' helps you gain an immediate understanding of the multivariate patterns in the lipidome already at first glance. You can create lipidome-wide heatmaps of statistical associations, changes, differences, variation, or other lipid-specific values. The heatmaps are provided with publication-ready quality and the results behind the visualizations are based on rigorous statistical models.

Install

R (CRAN)Ubuntu (r2u)

install.packages("lipidomeR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-lipidomer

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.6 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-06-09
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-05-02
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
9 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 333 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 71%
References docs: 30%

Downloads

2.9K

CRAN downloads in the past year

Rank #17,966 · ~8/day · ~238/mo

Releases R versions

Daily download trend is not available in this view yet.

20430 days

62490 days

2.9K1 year

Compare downloads with other packages →

Also on93 r2u283 bioconda

Repository

GitHub ↗ tommi-s/tommi-s.github.io

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0Forks

0Open issues

0Open PRs

0Releases

License MIT · Last activity 2024-09-23

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/tommi-s/tommi-s.github.io on 2026-07-30.

Continuous integration (1)

Travis CI

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (10)

BiocManager dplyr ggplot2 knitr limma reshape2 shadowtext stringr tableone tidyr

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Tommi Suvitaival

Author, Maintainer

Authors (1)

Tommi Suvitaival

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.2Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2020-03-15
Total releases: 1 / 6 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 150 KB / 3 files
Download size: 184 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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