heatmap3

1.1.9

An Improved Heatmap Package

1packages depend

15.5Kdownloads / year

–test coverage

0/13checks pass

Overview

About

Maintained by Shilin ZhaoFirst published 2014-06-106 releasesCRAN page ↗

An improved heatmap package. Completely compatible with the original R function 'heatmap', and provides more powerful and convenient features.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("heatmap3", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-heatmap3

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-heatmap3

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-heatmap3

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 1.1 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Yes

Vignettes

Yes

README

Dependencies · direct

Check history

NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

15.5K

CRAN downloads in the past year

Rank #4,003 · ~43/day · ~1.3K/mo

Releases R versions

Daily download trend is not available in this view yet.

72830 days

2.6K90 days

15.5K1 year

Compare downloads with other packages →

Also on147 r2u23 autocran2.3K conda_forge

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (1)

fastcluster

LinkingTo (0)

none

Suggests (1)

knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

rnaCrosslinkOO

Code & Tests

Code Composition

R 568 (59%)Rd 318 (33%)Vignettes 76 (8%)

Code characteristics

Cyclomatic complexity: 2.0 median / 102 max
Documented parameters: 92%

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

6 4 exported

Complexity

18.8 avg / 102 max

Call network

6 nodes / 2 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (0)

Author records are not tracked yet for this package.

Release timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.1.9Latest
2021-01-06 · current release · diff ↗
R
R 4.0.0 released · 2020-04-24
1.1.7
2020-03-03 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.1.6
2019-03-22 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
1.1.1
2015-04-12 · diff ↗

Show 3 earlier events

1.0.7
2014-08-29 · diff ↗
1.0.4
2014-06-10
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-06-10
Total releases: 6 / 12 yrs
License: GPL (>= 2) OSI
Download size: 131 KB
Installed size: not tracked yet
With dependencies: not tracked yet