gwid

0.3.0

Genome-Wide Identity-by-Descent

0packages depend

2.7Kdownloads / year

–test coverage

0/13checks pass

Overview

About

Maintained by Soroush MahmoudiandehkordiFirst published 2023-12-143 releasesCRAN page ↗GitHub ↗

Methods and tools for the analysis of Genome Wide Identity-by-Descent ('gwid') mapping data, focusing on testing whether there is a higher occurrence of Identity-By-Descent (IBD) segments around potential causal variants in cases compared to controls, which is crucial for identifying rare variants. To enhance its analytical power, 'gwid' incorporates a Sliding Window Approach, allowing for the detection and analysis of signals from multiple Single Nucleotide Polymorphisms (SNPs).

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("gwid", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("soroushmdg/gwid")

Development version from soroushmdg/gwid. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gwid

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 3.1 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-06-09
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
3 OK · 11 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 586 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.7K

CRAN downloads in the past year

Rank #16,708 · ~7/day · ~222/mo

Releases R versions

Daily download trend is not available in this view yet.

23930 days

65890 days

2.7K1 year

Compare downloads with other packages →

Also on107 r2u

Repository

GitHub ↗ soroushmdg/gwid

1Stars

0Forks

6Open issues

0Open PRs

3Releases

130Commits

5Contributors

130 commits · Last activity 2024-09-09

Stars over time

2023-06-02 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/soroushmdg/gwid on 2026-07-30.

Continuous integration (1)

GitHub Actions

CRAN release process (3)

cran-comments.mdrevdep/CRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (14)

data.table gdsfmt SNPRelateMatrixggplot2 plotlyutilsstatsRcppRollmethodspiggyback shinylatticegrid

LinkingTo (0)

none

Suggests (4)

knitr magrittr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Soroush Mahmoudiandehkordi

Author, Maintainer

Authors (3)

Soroush Mahmoudiandehkordi

Author, Maintainer

Mehdi Maadooliat

Author

Steven J Schrodi

Author · added in 0.2.0

Listed in earlier versions (1)

Steven Schrodi

no longer listed · 0.1.0

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.3.0Latest
2024-09-04 · current release · diff ↗
0.2.0
2024-06-10 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.1.0
2023-12-14
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-12-14
Total releases: 3 / 3 yrs
License: MIT + file LICENSE OSI
Download size: 1.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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