glmmfields

0.1.8

Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling

0packages depend

9.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Sean C. AndersonFirst published 2018-06-247 releasesCRAN page ↗GitHub ↗

Implements Bayesian spatial and spatiotemporal models that optionally allow for extreme spatial deviations through time. 'glmmfields' uses a predictive process approach with random fields implemented through a multivariate-t distribution instead of the usual multivariate normal. Sampling is conducted with 'Stan'. References: Anderson and Ward (2019) doi:10.1002/ecy.2403.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("glmmfields", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("seananderson/glmmfields")

Development version from seananderson/glmmfields. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-glmmfields

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-glmmfields

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-glmmfields

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 9.0 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.89

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
11 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 1 earlier snapshots

NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 50%
Documented parameters: 96%
Return-value docs: 0%
References docs: 8%

Downloads

9.8K

CRAN downloads in the past year

Rank #4,403 · ~27/day · ~819/mo

Releases R versions

Daily download trend is not available in this view yet.

57930 days

2.1K90 days

9.8K1 year

Compare downloads with other packages →

Also on415 r2u33 autocran33 c2d4u

Repository

GitHub ↗ seananderson/glmmfields

52Stars

11Forks

5Open issues

0Open PRs

1Releases

466Commits

5Contributors

rspatial-analysisextremesspatiotemporalecology

466 commits · Last activity 2023-10-19

Stars over time

2025-06-13 · 522026-07-07 · 52

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/seananderson/glmmfields on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

26 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.4.0methodsRcpp

Imports (15)

assertthat broom broom.mixedclusterdplyr forcats ggplot2 loo mvtnormnlmeRcppParallel reshape2 rstan rstantools tibble

LinkingTo (6)

BH Rcpp RcppEigen RcppParallel rstan StanHeaders (>= 2.26.0)

Suggests (7)

bayesplot coda knitrparallelrmarkdown testthat viridis

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

C 2,730 (45%)R 2,444 (40%)Rd 653 (11%)Vignettes 153 (3%)C++ 57 (1%)

Code characteristics

Object systems

S38

Cyclomatic complexity: 1.0 median / 37 max
Test cases: 26 / 0.89 per code line
System requirements: 1 external

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

25 7 exported

Complexity

5.9 avg / 37 max

Call network

25 nodes / 12 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (3)

Maintainer (1)

Sean C. Anderson

Author, Maintainer

Authors (2)

Sean C. Anderson

Author, Maintainer

Eric J. Ward

Author

Trustees of Columbia University

Listed in earlier versions (4)

Sean C.

no longer listed · 0.1.0 to 0.1.3

Eric J.

no longer listed · 0.1.0 to 0.1.3

Anderson

no longer listed · 0.1.4 to 0.1.8

Ward

no longer listed · 0.1.4 to 0.1.8

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.1.8Latest
2023-10-20 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
0.1.7
2023-03-10 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.1.4
2020-07-09 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.1.3
2019-05-18 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.1.2
2019-03-08 · diff ↗
0.1.1
2018-11-09 · diff ↗
0.1.0
2018-06-24
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-06-24
Total releases: 7 / 8 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.4.0
Download size: 342 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Mixed, Multilevel, and Hierarchical Models in R

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