ggpicrust2 call graph
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Coverage
59% lines
covr status: test_error
Expression
57.5%
Tests
59.0%
Examples
not measured
Vignettes
not measured
By file
R/pathway_ridgeplot.R
4%
R/compare_metagenome_results.R
6%
R/legend_annotation_utils.R
8%
R/zzz.R
23%
R/pathway_gsea.R
25%
R/pathway_daa.R
31%
R/compare_gsea_daa.R
35%
R/visualize_gsea.R
57%
R/color_themes.R
61%
R/pathway_annotation.R
66%
R/data_utils.R
68%
R/import_MicrobiomeAnalyst_daa_results.R
71%
Structure
- Functions
- 120
- Exported
- 37
- Compiled
- 0
- Call edges
- 185
Functions ranked by lowest coverage
| Function | Language | Lines | Cyclomatic | Coverage |
|---|---|---|---|---|
| create_gradient_colors exp | R | 30 | 4 | 0.0% |
| create_legend_theme exp | R | 59 | 7 | 0.0% |
| create_pathway_class_theme exp | R | 28 | 1 | 0.0% |
| format_pvalue_smart exp | R | 44 | 6 | 0.0% |
| get_available_themes exp | R | 5 | 1 | 0.0% |
| get_significance_colors exp | R | 19 | 3 | 0.0% |
| get_significance_stars exp | R | 20 | 3 | 0.0% |
| preview_color_theme exp | R | 51 | 4 | 0.0% |
| resolve_annotation_overlaps exp | R | 29 | 5 | 0.0% |
| smart_color_selection exp | R | 37 | 7 | 0.0% |
| .build_heatmap_col_fun | R | 23 | 4 | 0.0% |
| .onLoad | R | 13 | 2 | 0.0% |
| build_design_matrix | R | 28 | 5 | 0.0% |
| create_empty_daa_result | R | 24 | 2 | 0.0% |
| create_empty_gsea_result | R | 29 | 2 | 0.0% |
| create_heatmap_plot | R | 118 | 5 | 0.0% |
| normalize_contribution_values | R | 11 | 3 | 0.0% |
| perform_aldex2_analysis | R | 107 | 8 | 0.0% |
| perform_deseq2_analysis | R | 79 | 5 | 0.0% |
| perform_edger_analysis | R | 54 | 4 | 0.0% |