gProfileR

0.7.0

Interface to the 'g:Profiler' Toolkit

1packages depend

10.2Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Ivan KuzminFirst published 2012-11-2213 releasesCRAN page ↗

This package has been deprecated and will not be updated. New users should use the package 'gprofiler2' (https://CRAN.R-project.org/package=gprofiler2) for up-to-date data and improved functionality. Functional enrichment analysis, gene identifier conversion and mapping homologous genes across related organisms via the 'g:Profiler' toolkit (https://biit.cs.ut.ee/gprofiler/).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("gProfileR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gprofiler

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-gProfileR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-gProfileR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 58 s · r-release-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

None

Vignettes

README

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

10.2K

CRAN downloads in the past year

Rank #8,153 · ~28/day · ~853/mo

Releases R versions

Daily download trend is not available in this view yet.

48930 days

1.4K90 days

10.2K1 year

Compare downloads with other packages →

Also on72 r2u7 autocran2.2K conda_forge296 bioconda8 c2d4u

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (3)

RCurl plyrutils

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

scMappR

Code & Tests

Code Composition

R 570 (66%)Rd 293 (34%)

Code characteristics

Cyclomatic complexity: 3.0 median / 29 max
Documented parameters: 100%

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

9 9 exported

Complexity

5.8 avg / 29 max

Call network

9 nodes / 0 edges

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (0)

Author records are not tracked yet for this package.

Package Timeline

13 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.7.0Latest
2019-11-04 · current release · diff ↗
0.6.8
2019-09-07 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.6.7
2018-10-24 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.6.6
2018-04-20 · diff ↗
0.6.5
2018-04-13 · diff ↗
0.6.4
2018-02-15 · diff ↗
0.6.3
2018-01-30 · diff ↗

Show 12 earlier events

0.6.2
2017-12-19 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
0.6.1
2016-04-27 · diff ↗
R
R 3.2.0 released · 2015-04-16
0.5.3
2015-04-07 · diff ↗
R
R 3.1.0 released · 2014-04-10
0.5
2013-10-09 · diff ↗
0.4
2013-04-12 · diff ↗
R
R 3.0.0 released · 2013-04-03
0.2
2012-11-22
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-11-22
Total releases: 13 / 14 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Download size: 9.2 KB
Installed size: not tracked yet
With dependencies: not tracked yet