fishRman

1.2.3

The Fisheries Scientist's Toolbox

0packages depend

2.3Kdownloads / year

6.9%test coverage

11/13checks pass

Overview

About

Maintained by Pasquale BuonomoFirst published 2023-12-082 releasesCRAN page ↗GitHub ↗

A bundle of analytics tools for fisheries scientists. A 'shiny' R App is included for a 'no-code' solution for retrieval, analysis, and visualization.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("fishRman", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Shyentist/fish-r-man")

Development version from Shyentist/fish-r-man. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-fishrman

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-fishRman

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-fishRman

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc

Slowest check: 2.5 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.86

6.9%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 262 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.3K

CRAN downloads in the past year

Rank #18,034 · ~6/day · ~194/mo

Releases R versions

Daily download trend is not available in this view yet.

21230 days

65390 days

2.3K1 year

Compare downloads with other packages →

Also on94 r2u34 autocran

Repository

GitHub ↗ shyentist/fish-r-man

14Stars

4Forks

2Open issues

0Open PRs

5Releases

222Commits

3Contributors

marine-biologyfisheriesfisheries-researchfisheries-managementshinyropen-sourceglobalfishingwatch

License AGPL-3.0 · 222 commits · Last activity 2024-03-27

Stars over time

2024-01-18 · 142026-07-07 · 14

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/shyentist/fish-r-man on 2026-07-19.

Lint, format, editor (1)

RStudio project

Governance and community (2)

Issue templatesFunding

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (16)

config countrycode dplyr ggplot2 golem (>= 0.3.3)httr jsonlite maps sf shiny shinyBS shinyjs shinyWidgetsstatsutilsviridis

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,761 (53%)Other 1,426 (43%)Rd 152 (5%)

Code characteristics

Cyclomatic complexity: 1.0 median / 53 max
Test cases: 3 / 0.86 per code line

Test coverage

Line coverage

Expression

10.1%

Tests / Examples

6.9% / 7% ex

Functions

11 4 exported

Complexity

6.5 avg / 53 max

Call network

11 nodes / 8 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

11 functions

Function	Cyclo	Coverage
run_app exp	1	0%
app_server	53	0%
app_sys	1	0%
app_ui	1	0%
footer	1	0%
get_golem_config	1	0%

People & History

People (1)

Maintainer (1)

Pasquale Buonomo

Maintainer, Author

Authors (1)

Pasquale Buonomo

Maintainer, Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.2.3Latest
2024-03-27 · current release · diff ↗
1.2.2
2023-12-08
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-12-08
Total releases: 2 / 3 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 2.10
Download size: 782 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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