fioRa

package dependencies

Package required but not available: ‘rcdk’

Package suggested but not available for checking: ‘Spectra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

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package dependencies

Package suggested but not available for checking: ‘Spectra’

tests

  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [11s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(fioRa)
  > 
  > testthat::test_check("fioRa")
  2026-03-10 03:18:35.266 R[563:298904] XType: Using static font registry.
  Saving _problems/test-fct_read_fiora-43.R
  Loading required package: shiny
  [ FAIL 1 | WARN 0 | SKIP 5 | PASS 45 ]
  
  ══ Skipped tests (5) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-app_utils.R:40:1', 'test-app_utils.R:66:1',
    'test-find_fiora_predict_paths.R:2:3', 'test-run_script.R:3:3',
    'test-run_script.R:18:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-fct_read_fiora.R:43:3'): fioRa can read the standard fiora example annotated output mgf as Spectra format ──
  Error in `verify_suggested(pkg = c("S4Vectors", "Spectra"))`: The use of this function requires package Spectra. Please install.
  Backtrace:
      ▆
   1. └─fioRa::read_fiora(fl = fl, fmt = "Spectra") at test-fct_read_fiora.R:43:3
   2.   └─fioRa:::convert2Spectra(out)
   3.     └─fioRa:::verify_suggested(pkg = c("S4Vectors", "Spectra"))
  
  [ FAIL 1 | WARN 0 | SKIP 5 | PASS 45 ]
  Error:
  ! Test failures.
  Downloading uv...Done!
  Downloading cpython-3.12.13-macos-aarch64-none (download) (16.8MiB)
   Downloaded cpython-3.12.13-macos-aarch64-none (download)
  Downloading numpy (14.0MiB)
   Downloaded numpy
  Installed 1 package in 11ms
  Execution halted

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tests

  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [30s/37s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(fioRa)
  > 
  > testthat::test_check("fioRa")
  Saving _problems/test-fct_read_fiora-43.R
  Loading required package: shiny
  [ FAIL 1 | WARN 0 | SKIP 5 | PASS 45 ]
  
  ══ Skipped tests (5) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-app_utils.R:40:1', 'test-app_utils.R:66:1',
    'test-find_fiora_predict_paths.R:2:3', 'test-run_script.R:3:3',
    'test-run_script.R:18:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-fct_read_fiora.R:43:3'): fioRa can read the standard fiora example annotated output mgf as Spectra format ──
  Error in `verify_suggested(pkg = c("S4Vectors", "Spectra"))`: The use of this function requires package Spectra. Please install.
  Backtrace:
      ▆
   1. └─fioRa::read_fiora(fl = fl, fmt = "Spectra") at test-fct_read_fiora.R:43:3
   2.   └─fioRa:::convert2Spectra(out)
   3.     └─fioRa:::verify_suggested(pkg = c("S4Vectors", "Spectra"))
  
  [ FAIL 1 | WARN 0 | SKIP 5 | PASS 45 ]
  Error:
  ! Test failures.
  Execution halted

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