falcon
Finding Allele-Specific Copy Number in Next-Generation Sequencing Data
Description
This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (4 non-OK)
CRAN incoming feasibility
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Hao",
family = "Chen",
role = c("aut", "cre"),
email = "hxchen@ucdavis.edu"),
person(given = c("Nancy", "R."),
family = "Zhang",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Hao",
family = "Chen",
role = c("aut", "cre"),
email = "hxchen@ucdavis.edu"),
person(given = c("Nancy", "R."),
family = "Zhang",
role = "aut"))
as necessary.
compiled code
File ‘falcon/libs/falcon.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’ It is good practice to register native routines and to disable symbol search. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
compiled code
File ‘falcon/libs/falcon.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’ It is good practice to register native routines and to disable symbol search. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Check History
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Hao",
family = "Chen",
role = c("aut", "cre"),
email = "hxchen@ucdavis.edu"),
person(given = c("Nancy", "R."),
family = "Zhang",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Hao",
family = "Chen",
role = c("aut", "cre"),
email = "hxchen@ucdavis.edu"),
person(given = c("Nancy", "R."),
family = "Zhang",
role = "aut"))
as necessary.
compiled code
File ‘falcon/libs/falcon.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’ It is good practice to register native routines and to disable symbol search. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
compiled code
File ‘falcon/libs/falcon.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’ It is good practice to register native routines and to disable symbol search. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.