CRAN requires the check problems on this package to be fixed before 2026-08-31 or it will be archived.

epitools

0.5-10.1

Epidemiology Tools

14packages depend

125.9Kdownloads / year

–test coverage

0/13checks pass

Overview

About

Maintained by Adam OmidpanahFirst published 2004-11-0918 releasesCRAN page ↗

Tools for training and practicing epidemiologists including methods for two-way and multi-way contingency tables.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("epitools", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epitools

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-epitools

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-epitools

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 1.3 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

Dependencies · direct

Check history

NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 100%

Downloads

125.9K

CRAN downloads in the past year

Rank #1,405 · ~345/day · ~10.5K/mo

Releases R versions

Daily download trend is not available in this view yet.

5.5K30 days

22.8K90 days

125.9K1 year

Compare downloads with other packages →

Also on157 r2u24 autocran1.9K conda_forge69 c2d4u

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

14direct

0indirect

MultiPhen BiVariAn CMShiny CohortPlat TernTables cancerradarr catfun cats cft morse pubh tidyrates IncidencePrevalence tangram

Code & Tests

Code Composition

Rd 3,415 (51%)R 3,325 (49%)

Code characteristics

Cyclomatic complexity: 5.0 median / 30 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

50 0 exported

Complexity

6.4 avg / 30 max

Call network

50 nodes / 59 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 3

Name	Class	Rows × Cols	Also ships in
oswego	data.frame	75 × 21	–
wcgs	data.frame	3,154 × 14	–
wnv	data.frame	766 × 8	–

People & History

People (4)

Maintainer (1)

Adam Omidpanah

Maintainer, Contributor · added in 0.5-8

Authors (1)

Tomas J. Aragon

Author · added in 0.5-8

Contributors (3)

Adam Omidpanah

Maintainer, Contributor · added in 0.5-8

Michael P. Fay

Contributor · added in 0.5-8

Daniel Wollschlaeger

Contributor · added in 0.5-8

Listed in earlier versions (4)

Tomas Aragon

no longer listed · 0.09 to 0.5-6

Tomas J. Aragon Developer

no longer listed · 0.5-7

Daniel Wollschlaeger User

no longer listed · 0.5-7

Michael P. Fay User

no longer listed · 0.5-7

Package Timeline

18 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.5-10.1Latest
2020-03-22 · current release · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.5-10
2017-10-26 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.5-9
2017-04-15 · diff ↗
0.5-8
2017-03-23 · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16

Show 32 earlier events

R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
0.5-7
2012-09-30 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
0.5-6
2010-07-09 · diff ↗
R
R 2.11.0 released · 2010-04-22
0.5-5
2010-02-28 · diff ↗
0.5-4
2009-11-11 · diff ↗
R
R 2.10.0 released · 2009-10-26
R
R 2.9.0 released · 2009-04-17
0.5-3
2009-04-15 · diff ↗
0.5-2
2008-11-02 · diff ↗
R
R 2.8.0 released · 2008-10-20
0.5-0
2008-07-28 · diff ↗
R
R 2.7.0 released · 2008-04-22
R
R 2.6.0 released · 2007-10-03
0.4-9
2007-06-28 · diff ↗
0.4-8
2007-05-10 · diff ↗
R
R 2.5.0 released · 2007-04-24
R
R 2.4.0 released · 2006-10-03
R
R 2.3.0 released · 2006-04-24
R
R 2.2.0 released · 2005-10-06
R
R 2.1.0 released · 2005-04-18
0.4-7
2005-03-26 · diff ↗
0.4-6
2005-01-13 · diff ↗
0.3-3
2004-12-13 · diff ↗
0.2-1
2004-11-23 · diff ↗
0.09
2004-11-09
R
R 2.0.0 released · 2004-10-04

Package metadata

First published: 2004-11-09
Total releases: 18 / 22 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 31 KB / 3 files
Download size: 89 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Epidemiology

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