epiR

2.0.95

Tools for the Analysis of Epidemiological Data

12packages depend

256.7Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Mark StevensonFirst published 2008-03-24125 releasesCRAN page ↗

Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("epiR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epir

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-epiR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-epiR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 8.7 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 0% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 95%
References docs: 80%

Downloads

256.7K

CRAN downloads in the past year

Rank #902 · ~703/day · ~21.4K/mo

Releases R versions

Daily download trend is not available in this view yet.

14.1K30 days

52.8K90 days

256.7K1 year

Compare downloads with other packages →

Also on5.2K r2u34 autocran8.9K conda_forge90 c2d4u

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.0.0survival

Imports (9)

BiasedUrn pandermethodssf lubridate zoo flextablestatsofficer

LinkingTo (0)

none

Suggests (14)

MASSdplyrforeignggplot2 knitr rmarkdown bookdown plyr RColorBrewer scales sp spData spatstat tidyr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

12direct

1indirect

EpiStats RcmdrPlugin.EBM Dtableone dtComb gofcat spectacles FRESA.CAD broom insight metaConvert metaumbrella parameters

Code & Tests

Datasets

People & History

People (22)

Maintainer (1)

Mark Stevenson

Author, Maintainer · added in 2.0.17

Authors (2)

Mark Stevenson

Author, Maintainer · added in 2.0.17

Evan Sergeant

Author · added in 2.0.61

Contributors (20)

Allison Cheung

Contributor · added in 2.0.26

Simon Firestone

Contributor · added in 0.9-59

Cord Heuer

Contributor · added in 0.9-51

Mathew Jay

Contributor · added in 1.0-4

Geoff Jones

Contributor · added in 0.9-69

Ryan Kyle

Contributor · added in 0.9-74

Jonathon Marshall

Contributor · added in 0.9-51

Telmo Nunes

Contributor · added in 2.0.61

Show 12 more contributors

Sarah Pirikahu

Contributor · added in 0.9-69

Johann Popp

Contributor · added in 0.9-93

Ahmad Rabiee

Contributor · added in 2.0.65

Jeno Reiczigel

Contributor · added in 0.9-38

Jim Robison-Cox

Contributor · added in 0.9-38

Javier Sanchez

Contributor

Paola Sebastiani

Contributor · added in 0.9-38

Nagendra Singanallur

Contributor · added in 2.0.35

Peter Solymos

Contributor · added in 0.9-53

Aniko Szabo

Contributor · added in 2.0.43

Ron Thornton

Contributor · added in 0.9-38

Kazuki Yoshida

Contributor · added in 0.9-53

Listed in earlier versions (13)

Mark Stevenson with contributions from Telmo Nunes

no longer listed · 0.9-3 to 1.0-15

and Ron Thornton.

no longer listed · 0.9-3 to 0.9-36

Peter Solymos.

no longer listed · 0.9-46 to 0.9-51

Ryan Kyle.

no longer listed · 0.9-87

Johann Popp.

no longer listed · 0.9-91

Mathew Jay.

no longer listed · 0.9-93 to 1.0-2

Charles Reynard.

no longer listed · 1.0-4 to 2.0.19

Evan Sergeant with contributions from Telmo Nunes

no longer listed · 2.0.17 to 2.0.60

Package Timeline

125 releases. Pick two to compare their code metrics. R releases are shown for context.

2.0.95Latest
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R 2.6.0 released · 2007-10-03

Package metadata

First published: 2008-03-24
Total releases: 125 / 18 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.0.0
Bundled data: 6.7 KB / 3 files
Download size: 3.1 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Epidemiology Meta-Analysis Survival Analysis

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