envsetup

0.3.0

Support the Setup of the R Environment for Clinical Trial Programming Workflows

0packages depend

2Kdownloads / year

85.6%test coverage

13/13checks pass

Overview

About

Maintained by Nicholas MaselFirst published 2025-10-161 releasesCRAN page ↗GitHub ↗

The purpose of this package is to support the setup the R environment. The two main features are 'autos', to automatically source files and/or directories into your environment, and 'paths' to consistently set path objects across projects for input and output. Both are implemented using a configuration file to allow easy, custom configurations that can be used for multiple or all projects.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("envsetup", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("pharmaverse/envsetup")

Development version from pharmaverse/envsetup. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-envsetup

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-envsetup

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.8 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 1.65

85.6%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 242 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

CRAN downloads in the past year

Rank #20,627 · ~5/day · ~163/mo

Releases R versions

Daily download trend is not available in this view yet.

18930 days

56690 days

2K1 year

Compare downloads with other packages →

Also on48 r2u27 autocran

Repository

GitHub ↗ pharmaverse/envsetup

12Stars

4Forks

1Open issues

0Open PRs

2Releases

128Commits

6Contributors

License Apache-2.0 · 128 commits · Last activity 2025-10-17 · 0% stars, 30d

Stars over time

2025-04-07 · 92026-07-07 · 12

Repository practices

Upstream repositoryBeta

8 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/pharmaverse/envsetup on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (3)

cran-comments.mdrevdep/CRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (2)

lintrRStudio project

Show all practices

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (7)

config fs purrr rlang usethis envnamesutils

LinkingTo (0)

none

Suggests (13)

rmarkdown testthat knitr kableExtra magrittr devtools readr tidyr withr lintr styler renv covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (5)

Maintainer (1)

Nicholas Masel

Author, Maintainer

Authors (3)

Nicholas Masel

Author, Maintainer

Aidan Ceney

Author

Mike Stackhouse

Author

Atorus Research, Inc.

Johnson & Johnson Innovative Medicine

Funders (1)

Johnson & Johnson Innovative Medicine

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.3.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-10-16
Total releases: 1 / 1 yrs
License: Apache License 2.0 OSI
Download size: 218 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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