R Observatory: Metrics for ecoCopula version 1.0.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ecoCopula

1.0.6

Graphical Modelling and Ordination using Copulas

2packages depend

7.9Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by David WartonFirst published 2020-11-103 releasesCRAN page ↗

Creates 'graphs' of species associations (interactions) and ordination biplots from co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in Popovic, GC., Hui, FKC., Warton, DI., (2018) doi:10.1016/j.jmva.2017.12.002.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("ecoCopula", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ecocopula

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ecoCopula

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 2.7 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

15

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 1 earlier snapshots

ERROR2026-03-10
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Documentation

READMEYes · 74 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 79%
Documented parameters: 70%
Return-value docs: 53%
References docs: 0%

Downloads

7.9K

CRAN downloads in the past year

Rank #6,526 · ~22/day · ~656/mo

Releases R versions

Daily download trend is not available in this view yet.

38330 days

1.3K90 days

7.9K1 year

Compare downloads with other packages →

Also on152 r2u22 c2d4u

Repository

GitHub ↗ eco-stats/ecocopula

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2025-12-03

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/eco-stats/ecocopula on 2026-08-03.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.5.0mvabund

Imports (14)

glasso plyr snaMASStweedie igraph betareg doParallelmgcvglm2 ordinalcompilerforeachstats

LinkingTo (0)

none

Suggests (9)

knitr rmarkdown tidyr ggplot2 RColorBrewer ggraph labdsv tidygraphgrDevices

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

ecopower ecostats

Code & Tests

People & History

People (4)

Maintainer (1)

David Warton

Contributor, Maintainer · added in 1.0.2

Authors (1)

Gordana Popovic

Author

Contributors (3)

David Warton

Contributor, Maintainer · added in 1.0.2

Francis K.C. Hui

Contributor

Michelle Lim

Contributor

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.6Latest
2025-12-04 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0.2
2022-03-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.0.1
2020-11-10
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-11-10
Total releases: 3 / 6 yrs
License: LGPL (>= 2.1)
Minimum R: ≥ 3.5.0
Bundled data: 1.4 KB / 1 file
Download size: 288 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Analysis of Ecological and Environmental Data

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ecoCopula")

Format

Warton, D., Hui, F. K. C., Lim, M., & Popovic, G. (2025). ecoCopula: Graphical Modelling and Ordination using Copulas (Version 1.0.6) [Computer software]. https://doi.org/10.32614/CRAN.package.ecoCopula

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ecoCopula version 1.0.6 [Data set]. HJJB, LLC. Data release v2026-08-07. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-07, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →