diseasystore

0.3.3

Feature Stores for the 'diseasy' Framework

0packages depend

3.7Kdownloads / year

0.0%test coverage

12/13checks pass

Overview

About

Maintained by Rasmus Skytte RandløvFirst published 2023-12-209 releasesCRAN page ↗GitHub ↗

Simple feature stores and tools for creating personalised feature stores. 'diseasystore' powers feature stores which can automatically link and aggregate features to a given stratification level. These feature stores are automatically time-versioned (powered by the 'SCDB' package) and allows you to easily and dynamically compute features as part of your continuous integration.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("diseasystore", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ssi-dk/diseasystore")

Development version from ssi-dk/diseasystore. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-diseasystore

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-diseasystore

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1ERROR12OK

Failing flavors

ERROR r-release-macos-x86_64

Slowest check: 12.6 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 1.82

0.0%

Coverage · measured lines

95%

Documentation · exports

Dependencies · direct

Check history

ERROR2026-03-21
11 OK · 0 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE
NOTE2026-03-10
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 229 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 98%
Return-value docs: 100%
References docs: 0%

Downloads

3.7K

CRAN downloads in the past year

Rank #8,424 · ~10/day · ~312/mo

Releases R versions

Daily download trend is not available in this view yet.

54730 days

1.2K90 days

3.7K1 year

Compare downloads with other packages →

Also on131 r2u27 autocran

Repository

GitHub ↗ ssi-dk/diseasystore

4Stars

4Forks

6Open issues

3Open PRs

9Releases

1,147Commits

8Contributors

License GPL-3.0 · 1,147 commits · Last activity 2026-07-10 · 0% stars, 30d

Stars over time

2024-11-06 · 32026-07-07 · 4

Repository practices

Upstream repositoryBeta

8 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/ssi-dk/diseasystore on 2026-07-26.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (2)

lintrRStudio project

Governance and community (2)

Issue templatesPR template

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

35 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.3.0

Imports (18)

checkmate curl DBI dbplyr dplyr glue ISOweek jsonlite lubridate pkgcond purrr readr rlang R6 SCDB stringr tidyr tidyselect

LinkingTo (0)

none

Suggests (17)

devtools duckdb ggplot2 here knitr lintr microbenchmark odbc pkgdown rmarkdown RSQLite RPostgres testthat tibble spelling usethis withr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (7)

Maintainer (1)

Rasmus Skytte Randløv

Author, Maintainer

Authors (1)

Rasmus Skytte Randløv

Author, Maintainer

Statens Serum Institut, SSI

Funders (1)

Statens Serum Institut, SSI

Reviewers (5)

Lasse Engbo Christiansen

Reviewer

Kaare Græsbøll

Reviewer

Marcus Munch Grünewald

Reviewer

Sofia Myrup Otero

Reviewer · added in 0.2.0

Kasper Schou Telkamp

Reviewer

Listed in earlier versions (3)

Kaare Gr\u00E6sb\u00F8ll

no longer listed · 0.1 to 0.3.3

Marcus Munch Gr\u00FCnewald

no longer listed · 0.1 to 0.3.3

Rasmus Skytte Randl\u00F8v

no longer listed · 0.1 to 0.3.3

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.3.3Latest
2026-03-20 · current release · diff ↗
0.3.2
2025-10-17 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.3.1
2025-02-28 · diff ↗
0.3.0
2024-12-11 · diff ↗
0.2.2
2024-07-15 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.2.1
2024-04-22 · diff ↗
0.2.0
2024-03-20 · diff ↗
0.1.1
2024-01-18 · diff ↗
0.1
2023-12-20
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-12-20
Total releases: 9 / 3 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.3.0
Bundled data: 83 KB / 1 file
Download size: 568 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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