deltaccd

1.0.2

Quantify Rhythmic Gene Co-Expression Relative to a Reference

0packages depend

3.4Kdownloads / year

95.5%test coverage

13/13checks pass

Overview

About

Maintained by Jake HugheyFirst published 2022-02-111 releasesCRAN page ↗GitHub ↗

Infer progression of circadian rhythms in transcriptome data in which samples are not labeled with time of day and coverage of the circadian cycle may be incomplete. See Shilts et al. (2018) doi:10.7717/peerj.4327.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("deltaccd", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("hugheylab/deltaccd")

Development version from hugheylab/deltaccd. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-deltaccd

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-deltaccd

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

3.4K

CRAN downloads in the past year

Rank #13,312 · ~9/day · ~285/mo

deltaccd Releases R versions

Daily download trend is not available in this view yet.

29730 days

79090 days

3.4K1 year

Compare downloads with other packages →

Also on99 r2u31 autocran

Repository

GitHub ↗ hugheylab/deltaccd

1Stars

0Forks

0Open issues

0Open PRs

1Releases

143Commits

4Contributors

143 commits · Last activity 2022-12-01 · 0% stars, 30d

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/hugheylab/deltaccd on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4

Imports (7)

doRNG foreach ggplot2 rlang scales statmod data.table

LinkingTo (0)

none

Suggests (5)

doParallel knitr rmarkdown testthat (>= 3.0.0)vdiffr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Jake Hughey

Author, Maintainer

Authors (2)

Jake Hughey

Author, Maintainer

Elliot Outland

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.2Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2022-02-11
Total releases: 1 / 4 yrs
License: GPL-2 OSI
Download size: 813 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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