dPCP

2.0.3

Automated Analysis of Multiplex Digital PCR Data

0packages depend

3.1Kdownloads / year

0.0%test coverage

13/13checks pass

Overview

About

Maintained by Alfonso De FalcoFirst published 2020-09-255 releasesCRAN page ↗GitHub ↗

The automated clustering and quantification of the digital PCR data is based on the combination of 'DBSCAN' (Hahsler et al. (2019) doi:10.18637/jss.v091.i01) and 'c-means' (Bezdek et al. (1981) doi:10.1007/978-1-4757-0450-1) algorithms. The analysis is independent of multiplexing geometry, dPCR system, and input amount. The details about input data and parameters are available in the vignette.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("dPCP", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("alfodefalco/dPCP")

Development version from alfodefalco/dPCP. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dpcp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-dPCP

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-dPCP

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.6 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.00

0.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 21%
Documented parameters: 95%
Return-value docs: 100%
References docs: 0%

Downloads

3.1K

CRAN downloads in the past year

Rank #11,300 · ~8/day · ~256/mo

Releases R versions

Daily download trend is not available in this view yet.

38230 days

94490 days

3.1K1 year

Compare downloads with other packages →

Also on119 r2u9 autocran

Repository

GitHub ↗ alfodefalco/dpcp

2Stars

0Forks

0Open issues

0Open PRs

0Releases

36Commits

2Contributors

36 commits · Last activity 2026-06-22

Repository practices

Upstream repositoryBeta

Checks run against github.com/alfodefalco/dpcp on 2026-07-19.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (15)

clusterdbscan e1071 exactci ggplot2 ggpubrgraphicsraster rlist scales shiny shinyjsstatsstringrutils

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 3,490 (74%)Rd 965 (20%)Vignettes 285 (6%)

Code characteristics

Object systems

S35

Cyclomatic complexity: 10.0 median / 35 max
Test cases: 1 / 0.00 per code line

Test coverage

Line coverage

Expression

0.0%

Tests / Examples

0.0% / 6% ex

Functions

19 14 exported

Complexity

13.3 avg / 35 max

Call network

19 nodes / 10 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

19 functions

Function	Cyclo	Coverage
centers_data exp	13	0%
cmeans_clus exp	2	0%
dPCP exp	9	0%
dbscan_combination exp	19	0%
export_csv exp	10	0%
manual_correction exp	35	0%

People & History

People (5)

Maintainer (1)

Alfonso De Falco

Author, Maintainer

Authors (1)

Alfonso De Falco

Author, Maintainer

Contributors (3)

Michel Mittelbronn

Contributor

Christophe Olinger

Contributor

Daniel Stieber

Contributor

Laboratoire national de santé

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

2.0.3Latest
2026-06-23 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.0.1
2023-08-12 · diff ↗
R
R 4.3.0 released · 2023-04-21
2.0.0
2022-12-15 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.0.4
2021-07-29 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.0.3
2020-09-25
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-09-25
Total releases: 5 / 6 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.0.0
Download size: 2.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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