ctrlGene

1.0.1

Assess the Stability of Candidate Housekeeping Genes

1packages depend

3.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Shanliang ZhongFirst published 2018-09-302 releasesCRAN page ↗

A simple way to assess the stability of candidate housekeeping genes is implemented in this package.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ctrlGene", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ctrlgene

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ctrlGene

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ctrlGene

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 52 s · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 88%
Return-value docs: 80%
References docs: 100%

Downloads

3.6K

CRAN downloads in the past year

Rank #10,212 · ~10/day · ~301/mo

Releases R versions

Daily download trend is not available in this view yet.

33030 days

1.1K90 days

3.6K1 year

Compare downloads with other packages →

Also on106 r2u16 autocran

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (1)

R >= 3.2.3

Imports (3)

psychstatsgraphics

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

RQdeltaCT

Code & Tests

Code Composition

R 399 (55%)Rd 323 (45%)

Code characteristics

Cyclomatic complexity: 2.0 median / 5 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

10 10 exported

Complexity

2.7 avg / 5 max

Call network

10 nodes / 6 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 1

Name	Class	Rows × Cols	Also ships in
FIBct	data.frame	20 × 10	–

People & History

People (1)

Maintainer (1)

Shanliang Zhong

Author, Maintainer · added in 1.0.1

Authors (1)

Shanliang Zhong

Author, Maintainer · added in 1.0.1

Listed in earlier versions (1)

Shangliang Zhong

no longer listed · 1.0.0

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0.1Latest
2019-07-04 · current release · diff ↗
R
R 3.6.0 released · 2019-04-26
1.0.0
2018-09-30
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-09-30
Total releases: 2 / 8 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.2.3
Bundled data: 3.8 KB / 2 files
Download size: 10 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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