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cp4p

Calibration Plot for Proteomics

v0.3.6 · Feb 24, 2019 · GPL-3

Description

Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.

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CRAN Check Status

2 NOTE
11 OK
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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut", "cre"),
                      email = "quentin2g@yahoo.fr"),
               person(given = "Florence",
                      family = "Combes",
                      role = "aut"),
               person(given = "Claire",
                      family = "Ramus",
                      role = "aut"),
               person(given = "Christophe",
                      family = "Bruley",
                      role = "aut"),
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut", "cre"),
                      email = "quentin2g@yahoo.fr"),
               person(given = "Florence",
                      family = "Combes",
                      role = "aut"),
               person(given = "Claire",
                      family = "Ramus",
                      role = "aut"),
               person(given = "Christophe",
                      family = "Bruley",
                      role = "aut"),
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.

Check History

NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut"
...[truncated]...
,
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut"
...[truncated]...
,
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
ERROR 11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut"
...[truncated]...
,
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
ERROR r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut"
...[truncated]...
,
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut"
...[truncated]...
,
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut"
...[truncated]...
,
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
ERROR 9 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 25, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut"
...[truncated]...
,
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut"
...[truncated]...
,
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
ERROR r-release-macos-x86_64

package dependencies

Package required but not available: ‘MESS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut"
...[truncated]...
,
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut"
...[truncated]...
,
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.

Reverse Dependencies (2)

depends

imports

Dependency Network

Dependencies Reverse dependencies MESS multtest qvalue limma MSclassifR diagFDR cp4p

Version History

9 tracked
new 0.3.6 Mar 10, 2026
updated 0.3.6 ← 0.3.5 diff Feb 23, 2019
updated 0.3.5 ← 0.3.4 diff May 15, 2016
updated 0.3.4 ← 0.3.3 diff Feb 23, 2016
updated 0.3.3 ← 0.3.2 diff Nov 8, 2015
updated 0.3.2 ← 0.3.1 diff Oct 7, 2015
updated 0.3.1 ← 0.3 diff Aug 16, 2015
updated 0.3 ← 0.2 diff Jul 20, 2015
new 0.2 May 12, 2015