clintools

0.9.10.1

Tools for Clinical Research

0packages depend

4.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Markus Harboe OlsenFirst published 2021-05-1716 releasesCRAN page ↗GitHub ↗

Every research team have their own script for data management, statistics and most importantly hemodynamic indices. The purpose is to standardize scripts utilized in clinical research. The hemodynamic indices can be used in a long-format dataframe, and add both periods of interest (trigger-periods), and delete artifacts with deleter-files. Transfer function analysis (Claassen et al. (2016) doi:10.1177/0271678X15626425) and Mx (Czosnyka et al. (1996) doi:10.1161/01.str.27.10.1829) can be calculated using this package.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("clintools", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("lilleoel/clintools")

Development version from lilleoel/clintools. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clintools

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-clintools

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-clintools

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.8 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 100 wordsVignettesNopkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 50%
Documented parameters: 96%
Return-value docs: 100%
References docs: 33%

Downloads

4.1K

CRAN downloads in the past year

Rank #10,380 · ~11/day · ~345/mo

Releases R versions

Daily download trend is not available in this view yet.

30330 days

1K90 days

4.1K1 year

Compare downloads with other packages →

Also on180 r2u37 autocran

Repository

GitHub ↗ lilleoel/clintools

2Stars

1Forks

0Open issues

0Open PRs

7Releases

129Commits

1Contributors

129 commits · Last activity 2026-06-30

Stars over time

2024-03-14 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/lilleoel/clintools on 2026-07-26.

Continuous integration (1)

Travis CI

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (13)

signal xml2 lme4 ggplot2 pROC irr nlme (>= 3.1-160)parameters stringi scales dplyrsurvivalpander (>= 0.6.5)

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (6)

Maintainer (1)

Markus Harboe Olsen

Maintainer, Author

Authors (1)

Markus Harboe Olsen

Maintainer, Author

Contributors (5)

Ronan Berg

Contributor

Janus Christian Jakobsen

Contributor · added in 0.9.3

Aksel Karl Georg Jensen

Contributor · added in 0.9.3

Kirsten Moeller

Contributor

Christian Riberholt

Contributor

Package Timeline

16 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.9.10.1Latest
2023-12-11 · current release · diff ↗
0.9.10
2023-12-05 · diff ↗
0.9.9
2023-08-21 · diff ↗
0.9.8
2023-07-01 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.9.7
2022-11-22 · diff ↗
0.9.6
2022-07-13 · diff ↗
0.9.5
2022-07-07 · diff ↗
0.9.4
2022-06-22 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.9.3
2022-02-13 · diff ↗
0.9.2
2022-01-20 · diff ↗
0.9.1
2022-01-19 · diff ↗

Show 7 earlier events

0.9.0
2022-01-09 · diff ↗
0.8.5
2021-08-06 · diff ↗
0.8.2
2021-06-30 · diff ↗
0.8.1
2021-06-01 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.8.0
2021-05-17
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-05-17
Total releases: 16 / 5 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Bundled data: 437 KB / 2 files
Download size: 497 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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