clinUtils

0.2.2

General Utility Functions for Analysis of Clinical Data

3packages depend

6.9Kdownloads / year

99.5%test coverage

10/13checks pass

Overview

About

Maintained by Laure CougnaudFirst published 2021-06-0812 releasesCRAN page ↗GitHub ↗

Utility functions to facilitate the import, the reporting and analysis of clinical data. Example datasets in 'SDTM' and 'ADaM' format, containing a subset of patients/domains from the 'CDISC Pilot 01 study' are also available as R datasets to demonstrate the package functionalities.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("clinUtils", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("openanalytics/clinUtils")

Development version from openanalytics/clinUtils. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clinutils

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-clinUtils

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-clinUtils

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1ERROR2NOTE10OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
ERROR r-release-macos-arm64

Slowest check: 2.7 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.87

99.5%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

ERROR2026-03-30
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 81%
Documented parameters: 95%
Return-value docs: 100%
References docs: 0%

Downloads

6.9K

CRAN downloads in the past year

Rank #8,405 · ~19/day · ~572/mo

Releases R versions

Daily download trend is not available in this view yet.

37830 days

1.2K90 days

6.9K1 year

Compare downloads with other packages →

Also on284 r2u28 autocran

Repository

GitHub ↗ openanalytics/clinutils

3Stars

3Forks

0Open issues

0Open PRs

0Releases

145Commits

5Contributors

145 commits · Last activity 2025-12-04

Stars over time

2023-06-14 · 22026-07-07 · 3

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/openanalytics/clinutils on 2026-07-30.

Reproducibility and dev environment (1)

Dockerfile

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (10)

crosstalk data.table DT haven htmlwidgets knitr plyrtoolsutilsviridisLite

LinkingTo (0)

none

Suggests (8)

tibble ggplot2 plotly htmltools pander rmarkdown testthat flextable

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

0indirect

clinDataReview inTextSummaryTable patientProfilesVis

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Laure Cougnaud

Author, Maintainer

Authors (2)

Author, Maintainer

Author

Reviewers (1)

Reviewer · added in 0.1.0

Package Timeline

12 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.2.2Latest
2025-12-04 · current release · diff ↗
0.2.1
2025-09-03 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.2.0
2024-05-17 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.1.5
2024-04-23 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.1.4
2023-01-06 · diff ↗
0.1.3
2022-10-24 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.1
2022-02-22 · diff ↗
0.1.0
2021-09-22 · diff ↗
0.0.4
2021-07-21 · diff ↗
0.0.3
2021-07-16 · diff ↗
0.0.2
2021-07-14 · diff ↗

Show 2 earlier events

0.0.1
2021-06-08
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-06-08
Total releases: 12 / 5 yrs
License: MIT + file LICENSE OSI
Bundled data: 142 KB / 4 files
Download size: 2.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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