ccLRforR

1.2

Case-Control Likelihood Ratio (ccLR)

0packages depend

2.4Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Damianos MichaelidesFirst published 2026-03-033 releasesCRAN page ↗

Implementation of case-control data analysis using likelihood ratio approaches and logistic regression for the classification of variants of uncertain significance (VUS) in breast, ovarian, or custom cancer susceptibility genes.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ccLRforR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cclrforr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ccLRforR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ccLRforR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 2.1 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 94%
Return-value docs: 100%
References docs: 86%

Downloads

2.4K

CRAN downloads in the past year

Rank #8,394 · ~7/day · ~202/mo

Releases R versions

Daily download trend is not available in this view yet.

20030 days

1.2K90 days

2.4K1 year

Compare downloads with other packages →

Also on182 r2u3 autocran

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (5)

Rcpp dplyr tidyrutilsstats

LinkingTo (1)

Rcpp

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (6)

Maintainer (1)

Damianos Michaelides

Author, Maintainer

Authors (6)

Author, Maintainer

Author

Author

Author

Author · added in 1.1

Maria Zanti

Author

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.2Latest
2026-04-23 · current release · diff ↗
1.1
2026-03-05 · diff ↗
1.0
2026-03-03
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-03-03
Total releases: 3 / 1 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5
Bundled data: 6.0 KB / 9 files
Download size: 32 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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