c3net

1.1.1.1

Inferring Large-Scale Gene Networks with C3NET

1packages depend

7.1Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Gokmen AltayFirst published 2011-01-273 releasesCRAN page ↗

Allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("c3net", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-c3net

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-c3net

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-c3net

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.7 min · r-release-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 100%

Downloads

7.1K

CRAN downloads in the past year

Rank #6,560 · ~19/day · ~590/mo

Releases R versions

Daily download trend is not available in this view yet.

54330 days

1.5K90 days

7.1K1 year

Compare downloads with other packages →

Also on98 r2u37 autocran1.4K conda_forge

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (2)

R >= 2.12.1igraph

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

bc3net

Code & Tests

Code Composition

R 415 (51%)Rd 405 (49%)

Code characteristics

Cyclomatic complexity: 3.0 median / 7 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

8 0 exported

Complexity

3.8 avg / 7 max

Call network

8 nodes / 9 edges

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (2)

Gokmen Altay

no longer listed · 1.1.0 to 1.1.1.1

Frank Emmert-Streib

no longer listed · 1.1.0 to 1.1.1.1

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.1.1.1Latest
2022-06-24 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
1.1.1
2012-07-23 · diff ↗

Show 5 earlier events

R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
1.1.0
2011-01-27
R
R 2.12.0 released · 2010-10-15

Package metadata

First published: 2011-01-27
Total releases: 3 / 15 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.12.1
Bundled data: 369 KB / 2 files
Download size: 497 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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