bootcluster

0.4.3

Bootstrapping Estimates of Clustering Stability

0packages depend

3.9Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Tianmou LiuFirst published 2017-11-138 releasesCRAN page ↗

Implementation of the bootstrapping approach for the estimation of clustering stability and its application in estimating the number of clusters, as introduced by Yu et al (2016)doi:10.1142/9789814749411_0007. Implementation of the non-parametric bootstrap approach to assessing the stability of module detection in a graph, the extension for the selection of a parameter set that defines a graph from data in a way that optimizes stability and the corresponding visualization functions, as introduced by Tian et al (2021) doi:10.1002/sam.11495. Implemented out-of-bag stability estimation function and k-select Smin-based k-selection function as introduced by Liu et al (2022) doi:10.1002/sam.11593. Implemented ensemble clustering method based-on k-means clustering method, spectral clustering method and hierarchical clustering method.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("bootcluster", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bootcluster

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-bootcluster

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bootcluster

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.2 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-07-11
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 118 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 89%
References docs: 27%

Downloads

3.9K

CRAN downloads in the past year

Rank #11,484 · ~11/day · ~328/mo

Releases R versions

Daily download trend is not available in this view yet.

26530 days

92990 days

3.9K1 year

Compare downloads with other packages →

Also on137 r2u60 autocran

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.1

Imports (21)

clustermclust flexclust fpc dplyr doParallel foreach igraphcompilerstatsparallelgridgrDevicesggplot2 gridExtra intergraph GGally network kernlab sna progress

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 3,412 (74%)Rd 1,172 (26%)

Code characteristics

Cyclomatic complexity: 4.0 median / 22 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

42 19 exported

Complexity

6 avg / 22 max

Call network

42 nodes / 46 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 1

Name	Class	Rows × Cols	Also ships in
wine	data.frame	178 × 14	in 4 packages

People & History

People (3)

Maintainer (1)

Tianmou Liu

Author, Maintainer · added in 0.3.1

Authors (3)

Tianmou Liu

Author, Maintainer · added in 0.3.1

Mingmei Tian

Author · added in 0.2.0

Han Yu

Author

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.4.3Latest
2025-12-12 · current release · diff ↗
0.4.2
2025-06-18 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.4.1
2024-11-12 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.3.2
2022-01-29 · diff ↗
0.3.1
2022-01-23 · diff ↗
0.2.5
2021-06-10 · diff ↗
unarchivedReturned to CRAN
2021-06-10
R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-01-26
check problems were not corrected in time
0.2.0
2020-10-20 · diff ↗
R
R 4.0.0 released · 2020-04-24

Show 4 earlier events

R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.1.0
2017-11-13
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-11-13
Total releases: 8 / 9 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5.1
Bundled data: 4.9 KB / 1 file
Download size: 45 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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