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bonsaiforest

Shrinkage Based Forest Plots

v0.1.1 · Sep 27, 2024 · Apache License 2.0

Description

Subgroup analyses are routinely performed in clinical trial analyses. From a methodological perspective, two key issues of subgroup analyses are multiplicity (even if only predefined subgroups are investigated) and the low sample sizes of subgroups which lead to highly variable estimates, see e.g. Yusuf et al (1991) <doi:10.1001/jama.1991.03470010097038>. This package implements subgroup estimates based on Bayesian shrinkage priors, see Carvalho et al (2019) <https://proceedings.mlr.press/v5/carvalho09a.html>. In addition, estimates based on penalized likelihood inference are available, based on Simon et al (2011) <doi:10.18637/jss.v039.i05>. The corresponding shrinkage based forest plots address the aforementioned issues and can complement standard forest plots in practical clinical trial analyses.

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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

installed package size

  installed size is 10.3Mb
  sub-directories of 1Mb or more:
    data   8.4Mb
    libs   1.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 10.3Mb
  sub-directories of 1Mb or more:
    data   8.4Mb
    libs   1.3Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  9.4Mb
  sub-directories of 1Mb or more:
    data   7.7Mb
    libs   1.1Mb
OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 10.3Mb
  sub-directories of 1Mb or more:
    data   8.4Mb
    libs   1.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 10.3Mb
  sub-directories of 1Mb or more:
    data   8.4Mb
    libs   1.3Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  9.4Mb
  sub-directories of 1Mb or more:
    data   7.7Mb
    libs   1.1Mb

Dependency Network

Dependencies Reverse dependencies brms broom checkmate dplyr forcats gbm ggplot2 glmnet MASS Rcpp splines2 survival tibble tidyr tidyselect +1 more dependencies bonsaiforest

Version History

new 0.1.1 Mar 9, 2026