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bio.infer

Predict Environmental Conditions from Biological Observations

v1.3-6 · Sep 2, 2020 · GPL (>= 2)

Description

Imports benthic count data, reformats this data, and computes environmental inferences from this data.

Downloads

CRAN

328

Last 30 days

13692nd

885

Last 90 days

4.1K

Last year

Trend: +15.9% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

25

Last 90 days

159

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

13

Last 7 days

46

Last 30 days

1

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

2 NOTE
11 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Lester L. Yuan <yuan.lester@epa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Lester", "L."),
                    family = "Yuan",
                    role = c("aut", "cre"),
                    email = "yuan.lester@epa.gov")
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Lester L. Yuan <yuan.lester@epa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Lester", "L."),
                    family = "Yuan",
                    role = c("aut", "cre"),
                    email = "yuan.lester@epa.gov")
as necessary.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Lester L. Yuan <yuan.lester@epa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Lester", "L."),
                    family = "Yuan",
                    role = c("aut", "cre"),
                    email = "yuan.lester@epa.gov")
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Lester L. Yuan <yuan.lester@epa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Lester", "L."),
                    family = "Yuan",
                    role = c("aut", "cre"),
                    email = "yuan.lester@epa.gov")
as necessary.

Code

Structure

Lines of code

2,950

Files

77

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,674 (56.7%)Docs 1,276 (43.3%)

API

Exported functions

30

Internal functions

0

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

10.5%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.10

System requirements

C++ standard

License

GPL (>= 2)

License flags

SPDX valid, OSI approved

History

Versions

19

First release

2007-06-15

Latest release

2020-09-02

Avg cadence

109 days

Cold removal rate

100%

Dep drift

0

LOC over versions

v1.1: 2,338 LOCv1.1-1: 2,345 LOCv1.1-2: 2,349 LOCv1.1-6: 2,349 LOCv1.1-3: 2,298 LOCv1.1-4: 2,315 LOCv1.1-5: 2,316 LOCv1.2-1: 2,695 LOCv1.2-2: 2,819 LOCv1.2-3: 2,821 LOCv1.2-4: 2,821 LOCv1.2-5: 2,831 LOCv1.2-6: 2,908 LOCv1.2-7: 2,908 LOCv1.2-8: 2,917 LOCv1.2-9: 2,940 LOCv1.3-1: 2,940 LOCv1.3-3: 2,943 LOCv1.3-6: 2,950 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Version History

20 tracked
new 1.3-6 Mar 10, 2026
updated 1.3-6 ← 1.3-3 diff Sep 1, 2020
updated 1.3-3 ← 1.3-1 diff Feb 11, 2014
updated 1.3-1 ← 1.2-9 diff Mar 18, 2012
updated 1.2-9 ← 1.2-8 diff Nov 22, 2010
updated 1.2-8 ← 1.2-7 diff Mar 7, 2010
updated 1.2-7 ← 1.2-6 diff Feb 27, 2010
updated 1.2-6 ← 1.2-5 diff Feb 22, 2010
updated 1.2-5 ← 1.2-4 diff Oct 7, 2009
updated 1.2-4 ← 1.2-3 diff Jul 17, 2009
updated 1.2-3 ← 1.2-2 diff Mar 5, 2009
updated 1.2-2 ← 1.2-1 diff Feb 18, 2009
updated 1.2-1 ← 1.1-6 diff Feb 16, 2009
updated 1.1-6 ← 1.1-5 diff Jan 11, 2009
updated 1.1-5 ← 1.1-4 diff Dec 7, 2008