bigDM

0.5.7

Scalable Bayesian Disease Mapping Models for High-Dimensional Data

0packages depend

8.3Kdownloads / year

0.0%test coverage

13/13checks pass

Overview

About

Maintained by Aritz AdinFirst published 2022-02-0810 releasesCRAN page ↗GitHub ↗

Implements several spatial and spatio-temporal scalable disease mapping models for high-dimensional count data using the INLA technique for approximate Bayesian inference in latent Gaussian models (Orozco-Acosta et al., 2021 doi:10.1016/j.spasta.2021.100496; Orozco-Acosta et al., 2023 doi:10.1016/j.cmpb.2023.107403 and Vicente et al., 2023 doi:10.1007/s11222-023-10263-x). The creation and develpment of this package has been supported by Project MTM2017-82553-R (AEI/FEDER, UE) and Project PID2020-113125RB-I00/MCIN/AEI/10.13039/501100011033. It has also been partially funded by the Public University of Navarra (project PJUPNA2001).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("bigDM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("spatialstatisticsupna/bigDM")

Development version from spatialstatisticsupna/bigDM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bigdm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-bigDM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bigDM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 8.0 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.00

0.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-06-08
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 534 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 40%
Documented parameters: 100%
Return-value docs: 100%
References docs: 50%

Downloads

8.3K

CRAN downloads in the past year

Rank #5,485 · ~23/day · ~688/mo

Releases R versions

Daily download trend is not available in this view yet.

37930 days

1.7K90 days

8.3K1 year

Compare downloads with other packages →

Also on623 r2u82 autocran

Repository

GitHub ↗ spatialstatisticsupna/bigdm

17Stars

5Forks

0Open issues

0Open PRs

0Releases

214Commits

5Contributors

214 commits · Last activity 2025-09-16 · 0% stars, 30d

Stars over time

2025-03-29 · 162026-07-07 · 17

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/spatialstatisticsupna/bigdm on 2026-07-19.

Continuous integration (1)

GitHub Actions

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (20)

crayon doParallel fastDummies foreach future future.apply geosMASSMatrixmethodsparallelparallelly RColorBrewer Rdpack sf spatialreg spdepstatsutilsrlist

LinkingTo (0)

none

Suggests (6)

bookdown INLA knitr rmarkdown testthat (>= 3.0.0)tmap

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 3,616 (74%)Rd 1,284 (26%)

Code characteristics

Cyclomatic complexity: 4.0 median / 78 max
Test cases: 1 / 0.00 per code line

Test coverage

Line coverage

Expression

0.0%

Tests / Examples

0.0% / 3% ex

Functions

21 14 exported

Complexity

15 avg / 78 max

Call network

21 nodes / 19 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

21 functions

Function	Cyclo	Coverage
CAR_INLA exp	56	0%
MCAR_INLA exp	39	0%
Mmodel_compute_cor exp	5	0%
Mmodel_icar exp	3	0%
Mmodel_iid exp	3	0%
Mmodel_lcar exp	3	0%

Datasets

Bundled datasets · 2

Name	Class	Rows × Cols	Also ships in
Data_LungCancer	data.frame	197,675 × 6	–
Data_MultiCancer	data.frame	23,721 × 5	–

People & History

People (3)

Maintainer (1)

Aritz Adin

Author, Maintainer

Authors (3)

Aritz Adin

Author, Maintainer

Erick Orozco-Acosta

Author

Maria Dolores Ugarte

Author

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.5.7Latest
2025-09-16 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
0.5.6
2025-03-25 · diff ↗
0.5.5
2024-08-19 · diff ↗
0.5.4
2024-05-30 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.5.3
2023-10-17 · diff ↗
0.5.2
2023-07-20 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.5.1
2023-02-22 · diff ↗
0.5.0
2022-10-28 · diff ↗
0.4.2
2022-06-27 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.4.1
2022-02-08
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-02-08
Total releases: 10 / 4 yrs
License: GPL-3 OSI
Additional repositories: inla.r-inla-download.org
Minimum R: ≥ 4.0.0
Bundled data: 4.5 MB / 3 files
Download size: 4.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →