beeca

0.2.0

Binary Endpoint Estimation with Covariate Adjustment

1packages depend

7.2Kdownloads / year

98.8%test coverage

0/13checks pass

Overview

About

Maintained by Alex PrzybylskiFirst published 2024-06-182 releasesCRAN page ↗GitHub ↗

Performs estimation of marginal treatment effects for binary outcomes when using logistic regression working models with covariate adjustment (see discussions in Magirr et al (2024) https://osf.io/9mp58/). Implements the variance estimators of Ge et al (2011) doi:10.1177/009286151104500409 and Ye et al (2023) doi:10.1080/24754269.2023.2205802.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("beeca", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("openpharma/beeca")

Development version from openpharma/beeca. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-beeca

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-beeca

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 1.7 min · r-oldrel-windows-x86_64

Check history

NOTE2026-03-10
3 OK · 11 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

7.2K

CRAN downloads in the past year

Rank #5,845 · ~20/day · ~600/mo

beeca Releases R versions

Daily download trend is not available in this view yet.

34930 days

1.6K90 days

7.2K1 year

Compare downloads with other packages →

Also on172 r2u58 autocran

Repository

GitHub ↗ openpharma/beeca

7Stars

1Forks

3Open issues

1Open PRs

2Releases

23Commits

3Contributors

ardcovariate-adjustmentdelta-methodmarginal-effectsmarginal-estimand

License LGPL-3.0 · 23 commits · Last activity 2026-02-09 · 0% stars, 30d

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/openpharma/beeca on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (4)

dplyr lifecycle sandwichstats

LinkingTo (0)

none

Suggests (7)

knitr rmarkdown testthat tidyr marginaleffects margins RobinCar

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

rbmiUtils

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Alex Przybylski

Maintainer, Author

Authors (4)

Maintainer, Author

Author

Author

Author

Package Timeline

2 releases. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.2.0Latest
2024-11-12 · current release · diff ↗
0.1.3
2024-06-18
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-06-18
Total releases: 2 / 2 yrs
License: LGPL (>= 3) OSI
Download size: 81 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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