bayespmtools

0.0.2

Bayesian Sample Size and Precision Considerations for Risk Prediction Models

0packages depend

1.8Kdownloads / year

75.5%test coverage

12/13checks pass

Overview

About

Maintained by Mohsen SadatsafaviFirst published 2026-03-292 releasesCRAN page ↗GitHub ↗

Performs Bayesian sample size, precision, and value-of-information analysis for external validation of existing multi-variable prediction models using the approach proposed by Sadatsafavi and colleagues (2026) doi:10.1002/sim.70389.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("bayespmtools", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("resplab/bayespmtools")

Development version from resplab/bayespmtools. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bayespmtools

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-bayespmtools

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bayespmtools

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 4.1 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.33

75.5%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-30
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 54 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 83%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

1.8K

CRAN downloads in the past year

Rank #8,312 · ~5/day · ~151/mo

Releases R versions

Daily download trend is not available in this view yet.

23130 days

1.2K90 days

1.8K1 year

Compare downloads with other packages →

Also on47 r2u10 autocran

Repository

GitHub ↗ resplab/bayespmtools

3Stars

1Forks

0Open issues

0Open PRs

1Releases

51Commits

4Contributors

51 commits · Last activity 2026-06-03 · 0% stars, 30d

Stars over time

2025-04-22 · 22026-07-07 · 3

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/resplab/bayespmtools on 2026-08-02.

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (8)

fastLogisticRegressionWrap logitnorm mc2d mcmapper pROC cobs OOR quantreg

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown ggplot2 testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Mohsen Sadatsafavi

Author, Maintainer

Authors (1)

Mohsen Sadatsafavi

Author, Maintainer

Contributors (1)

Anna Luo

Contributor

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

0.0.2Latest
2026-06-05 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.0.1
2026-03-29
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-03-29
Total releases: 2 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 0.8 KB / 1 file
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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