bayesTLS

1.0.0

Joint Bayesian 4PL Models for Thermal Load Sensitivity

0packages depend

160downloads / year

59.0%test coverage

12/13checks pass

Overview

About

Maintained by Daniel W. A. NobleFirst published 2026-07-211 releasesCRAN page ↗GitHub ↗

Fits joint Bayesian four-parameter logistic (4PL) models to thermal-tolerance proportion data, extracts the classical thermal load sensitivity quantities (z, CTmax at 1 hour, T_crit) with full posterior uncertainty, and predicts heat-injury accumulation and survival under fluctuating temperature regimes with optional Sharpe-Schoolfield repair. Models are fitted with 'Stan' via the 'brms' package. Implements the framework described in Noble, Arnold, Nakagawa and Pottier (in preparation).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("bayesTLS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("daniel1noble/bayesTLS")

Development version from daniel1noble/bayesTLS. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bayestls

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-bayesTLS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bayesTLS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 2.5 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.84

59.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-22
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 1,849 wordsVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 43%
Documented parameters: 91%
Return-value docs: 100%
References docs: 0%

Downloads

160

CRAN downloads in the past year

Rank #24,411 · ~0/day · ~13/mo

Releases R versions

Daily download trend is not available in this view yet.

16030 days

16090 days

1601 year

Compare downloads with other packages →

Also on4 r2u3 autocran

Repository

GitHub ↗ daniel1noble/bayestls

2Stars

0Forks

0Open issues

0Open PRs

0Releases

675Commits

4Contributors

675 commits · Last activity 2026-07-23 · +100% stars, 30d

Stars over time

2026-07-22 · 12026-07-23 · 2

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/daniel1noble/bayestls on 2026-08-02.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (2)

data-raw/Makefile

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

How this is detected·Detection ruleset v1 (2026-07-18)

Development tooling

AI-assisted toolingBeta

Uses AI-assisted development tooling (declared in repo)

Earliest detected marker: claude on 2026-04-21

claude

Most recent: claude on 2026-04-21

Evidence

claude: on 2026-04-21 · evidence B, D

How this is detected·Detection ruleset v2 (updated 2026-07-29)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (10)

brms dplyr ggplot2MASSmethodspatchwork posteriorstatstibbleutils

LinkingTo (0)

none

Suggests (8)

cmdstanr glmmTMB here pkgload readxl testthat (>= 3.0.0)tidybayes tidyr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Daniel W. A. Noble

Author, Maintainer

Authors (4)

Author, Maintainer

Author

Author

Author

Package Timeline

1 release. R releases are shown for context.

1.0.0Latest
2026-07-21 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-07-21
Total releases: 1 / 1 yrs
License: CC BY 4.0
Additional repositories: stan-dev.r-universe.dev
Minimum R: ≥ 4.1.0
Bundled data: 21 KB / 4 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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