R Observatory: Metrics for bayclumpr version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

bayclumpr

0.1.0

Bayesian Analysis of Clumped Isotope Datasets

0packages depend

2.7Kdownloads / year

16.6%test coverage

13/13checks pass

Overview

About

Maintained by Cristian Roman PalaciosFirst published 2023-03-291 releasesCRAN page ↗GitHub ↗

Simulating synthetic clumped isotope dataset, fitting linear regression models under Bayesian and non-Bayesian frameworks, and generating temperature reconstructions for the same two approaches. Please note that models implemented in this package are described in Roman-Palacios et al. (2021) doi:10.1002/essoar.10507995.1.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("bayclumpr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Tripati-Lab/bayclumpr")

Development version from Tripati-Lab/bayclumpr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bayclumpr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-bayclumpr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bayclumpr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.1 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 0.08

16.6%

Coverage · measured lines

100%

Documentation · exports

6

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.7K

CRAN downloads in the past year

Rank #14,090 · ~7/day · ~223/mo

Releases R versions

Daily download trend is not available in this view yet.

25930 days

71790 days

2.7K1 year

Compare downloads with other packages →

Also on114 r2u10 autocran

Repository

GitHub ↗ tripati-lab/bayclumpr

1Stars

0Forks

0Open issues

0Open PRs

0Releases

38Commits

2Contributors

38 commits · Last activity 2025-10-01

Stars over time

2023-03-28 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/tripati-lab/bayclumpr on 2026-08-03.

Continuous integration (1)

GitHub Actions

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (6)

parallelloo deming IsoplotR rstanstats

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Cristian Roman Palacios

Author, Maintainer

Authors (3)

Cristian Roman Palacios

Author, Maintainer

Hannah M. Carroll

Author

Aradhna Tripati

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2023-03-29
Total releases: 1 / 3 yrs
License: MIT + file LICENSE OSI
Download size: 145 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("bayclumpr")

Format

Roman Palacios, C., Carroll, H. M., & Tripati, A. (2023). bayclumpr: Bayesian Analysis of Clumped Isotope Datasets (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.bayclumpr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for bayclumpr version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-07. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-07, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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