Description
Implementation of multisource exchangeability models for Bayesian analyses of prespecified subgroups arising in the context of basket trial design and monitoring. The R 'basket' package facilitates implementation of the binary, symmetric multi-source exchangeability model (MEM) with posterior inference arising from both exact computation and Markov chain Monte Carlo sampling. Analysis output includes full posterior samples as well as posterior probabilities, highest posterior density (HPD) interval boundaries, effective sample sizes (ESS), mean and median estimations, posterior exchangeability probability matrices, and maximum a posteriori MEMs. In addition to providing "basketwise" analyses, the package includes similar calculations for "clusterwise" analyses for which subgroups are combined into meta-baskets, or clusters, using graphical clustering algorithms that treat the posterior exchangeability probabilities as edge weights. In addition plotting tools are provided to visualize basket and cluster densities as well as their exchangeability. References include Hyman, D.M., Puzanov, I., Subbiah, V., Faris, J.E., Chau, I., Blay, J.Y., Wolf, J., Raje, N.S., Diamond, E.L., Hollebecque, A. and Gervais, R (2015) <doi:10.1056/NEJMoa1502309>; Hobbs, B.P. and Landin, R. (2018) <doi:10.1002/sim.7893>; Hobbs, B.P., Kane, M.J., Hong, D.S. and Landin, R. (2018) <doi:10.1093/annonc/mdy457>; and Kaizer, A.M., Koopmeiners, J.S. and Hobbs, B.P. (2017) <doi:10.1093/biostatistics/kxx031>.
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| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
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Check details (16 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Michael J. Kane <michael.kane@yale.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Michael J. Kane <michael.kane@yale.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-devel-macos-arm64
Rd files
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-devel-windows-x86_64
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
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31 | \item{[text_color]}{A text string setting the color of the exchangeability
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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33 | \item{[tile_color]}{A text string setting the color of the edges of the
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20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-oldrel-macos-arm64
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checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:31: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:31-32: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:33: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:33-34: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:31: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:31-32: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:33: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:33-34: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:31: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:31-32: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:33: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:33-34: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:31: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:31-32: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:33: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:33-34: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:31: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:31-32: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:33: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:33-34: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:31: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:31-32: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:33: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:33-34: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:31: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:31-32: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:33: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:33-34: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:31: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:31-32: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:33: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:33-34: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Michael J. Kane <michael.kane@yale.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Michael J. Kane <michael.kane@yale.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-
Dependency Network
Version History
new
0.10.11
Mar 9, 2026