adnuts

1.1.2

No-U-Turn MCMC Sampling for 'ADMB' Models

0packages depend

6.5Kdownloads / year

0.0%test coverage

11/13checks pass

Overview

About

Maintained by Cole MonnahanFirst published 2018-02-083 releasesCRAN page ↗GitHub ↗

Bayesian inference using the no-U-turn (NUTS) algorithm by Hoffman and Gelman (2014) https://www.jmlr.org/papers/v15/hoffman14a.html. Designed for 'AD Model Builder' ('ADMB') models, or when R functions for log-density and log-density gradient are available, such as 'Template Model Builder' models and other special cases. Functionality is similar to 'Stan', and the 'rstan' and 'shinystan' packages are used for diagnostics and inference.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("adnuts", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Cole-Monnahan-NOAA/adnuts")

Development version from Cole-Monnahan-NOAA/adnuts. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-adnuts

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-adnuts

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-adnuts

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 4.2 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.17

0.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-03-10
9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 627 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 88%
Documented parameters: 100%
Return-value docs: 64%
References docs: 14%

Downloads

6.5K

CRAN downloads in the past year

Rank #9,887 · ~18/day · ~539/mo

Releases R versions

Daily download trend is not available in this view yet.

39230 days

1.1K90 days

6.5K1 year

Compare downloads with other packages →

Also on223 r2u3 autocran

Repository

GitHub ↗ cole-monnahan-noaa/adnuts

25Stars

14Forks

0Open issues

0Open PRs

6Releases

480Commits

6Contributors

480 commits · Last activity 2026-04-03 · 0% stars, 30d

Stars over time

2024-12-09 · 242026-07-07 · 25

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/cole-monnahan-noaa/adnuts on 2026-07-30.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.6.0snowfall

Imports (5)

ellipse rstan R2admb ggplot2 rlang

LinkingTo (0)

none

Suggests (8)

shinystan matrixcalcstatsknitr TMB rmarkdown withr testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Cole Monnahan

Author, Maintainer

Authors (1)

Cole Monnahan

Author, Maintainer

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.1.2Latest
2021-03-02 · current release · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.0.1
2019-04-04 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.0.0
2018-02-08
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2018-02-08
Total releases: 3 / 8 yrs
License: GPL-3 | file LICENSE OSI
Minimum R: ≥ 3.6.0
Download size: 2.7 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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