admiralonco

1.4.1

Oncology Extension Package for ADaM in 'R' Asset Library

1packages depend

7.2Kdownloads / year

97.5%test coverage

13/13checks pass

Overview

About

Maintained by Stefan BundfussFirst published 2022-09-1311 releasesCRAN page ↗GitHub ↗

Programming oncology specific Clinical Data Interchange Standards Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in 'R'. ADaM datasets are a mandatory part of any New Drug or Biologics License Application submitted to the United States Food and Drug Administration (FDA). Analysis derivations are implemented in accordance with the "Analysis Data Model Implementation Guide" (CDISC Analysis Data Model Team (2021), https://www.cdisc.org/standards/foundational/adam). The package is an extension package of the 'admiral' package.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("admiralonco", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("pharmaverse/admiralonco")

Development version from pharmaverse/admiralonco. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-admiralonco

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-admiralonco

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-admiralonco

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 7.1 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.68

97.5%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 457 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 83%
References docs: 0%

Downloads

7.2K

CRAN downloads in the past year

Rank #5,209 · ~20/day · ~597/mo

Releases R versions

Daily download trend is not available in this view yet.

49930 days

1.7K90 days

7.2K1 year

Compare downloads with other packages →

Also on216 r2u52 autocran

Repository

GitHub ↗ pharmaverse/admiralonco

45Stars

6Forks

10Open issues

3Open PRs

11Releases

1,181Commits

34Contributors

License Apache-2.0 · 1,181 commits · Last activity 2026-07-22 · 0% stars, 30d

Stars over time

2025-04-22 · 322026-07-07 · 45

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/pharmaverse/admiralonco on 2026-07-30.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

Dev Container

Lint, format, editor (1)

RStudio project

Governance and community (1)

Issue templates

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

30 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (9)

admiral admiraldev cli dplyr (>= 0.8.4)lifecycle lubridate magrittr rlang tidyselect

LinkingTo (0)

none

Suggests (22)

covr devtools diffdf DT gt here knitr lintr metatoolsmethodsminiUI pharmaverseadam pharmaversesdtm pkgdown rmarkdown roxygen2 spelling stringr testthat (>= 3.0.0)tibble usethis withr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

psm3mkv

Code & Tests

Datasets

People & History

People (13)

Maintainer (1)

Stefan Bundfuss

Author, Maintainer

Authors (7)

Author, Maintainer

Author

Author

Author · added in 1.3.0

Vinh Nguyen

Author · added in 0.4.0

Kiran Peddamudium

Author · added in 1.3.0

Olga Starostecka

Author · added in 1.0.0

Contributors (2)

Yirong Cao

Contributor · added in 0.2.0

Ashwini Weber

Contributor · added in 1.3.0

Amgen Inc.

Bristol Myers Squibb

F. Hoffmann-La Roche AG

GlaxoSmithKline LLC

Funders (4)

Amgen Inc.

Bristol Myers Squibb

F. Hoffmann-La Roche AG

GlaxoSmithKline LLC

Listed in earlier versions (16)

Teckla Akinyi